View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1836_high_89 (Length: 254)

Name: NF1836_high_89
Description: NF1836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1836_high_89
NF1836_high_89
[»] chr8 (16 HSPs)
chr8 (1-239)||(5568607-5568845)
chr8 (1-239)||(14403177-14403415)
chr8 (1-218)||(5598377-5598594)
chr8 (1-218)||(5636681-5636898)
chr8 (1-218)||(6313668-6313885)
chr8 (1-232)||(5624476-5624707)
chr8 (1-219)||(13164324-13164542)
chr8 (1-192)||(5547495-5547692)
chr8 (15-216)||(12178726-12178924)
chr8 (15-216)||(12423154-12423352)
chr8 (15-216)||(12190421-12190619)
chr8 (15-216)||(12434849-12435047)
chr8 (5-219)||(32632617-32632822)
chr8 (63-192)||(5562327-5562456)
chr8 (116-216)||(5572753-5572853)
chr8 (2-34)||(5562473-5562505)
[»] scaffold0363 (1 HSPs)
scaffold0363 (1-239)||(15438-15676)
[»] chr2 (3 HSPs)
chr2 (65-171)||(19496002-19496108)
chr2 (83-123)||(16334755-16334795)
chr2 (78-134)||(17660989-17661045)


Alignment Details
Target: chr8 (Bit Score: 223; Significance: 1e-123; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 5568845 - 5568607
Alignment:
Q  1 tgaagggtcaacatggtagaacacaggaataacaccaacgttgtcgtcttcatttttgttacggcactccattagttcaacaagttcattcaaacacaat 100  Q
    |||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  5568845 tgaagggtcaacatggtagaacacaggaatcacaccaatgttgtcgtcttcatttttgttacggcactccattagttcaacaagttcattcaaacaccat 5568746  T
Q  101 gttgaagaagcatagttctctgagaacacaacaagaaacagagttgattgtttgattgctttctcaagttctggccaaacttcatctcctttctcgatcc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5568745 gttgaagaagcatagttctctgagaacacaacaagaaacagagttgattgtttgattgctttctcaagttctggccaaacttcatctcctttctcgatcc 5568646  T
Q  201 tatagtctatgtaggtatgtaaataggttcgggaaagag 239  Q
    ||||||||||||| |||||||||||||||||||||||||    
T  5568645 tatagtctatgtaagtatgtaaataggttcgggaaagag 5568607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 14403415 - 14403177
Alignment:
Q  1 tgaagggtcaacatggtagaacacaggaataacaccaacgttgtcgtcttcatttttgttacggcactccattagttcaacaagttcattcaaacacaat 100  Q
    ||||||||||||||||||||||||||||| |||| |||||||||| ||||||||||||||||  |||||||||| |||||| ||||| ||||||||| ||    
T  14403415 tgaagggtcaacatggtagaacacaggaacaacaacaacgttgtcatcttcatttttgttactacactccattatttcaaccagttcgttcaaacaccat 14403316  T
Q  101 gttgaagaagcatagttctctgagaacacaacaagaaacagagttgattgtttgattgctttctcaagttctggccaaacttcatctcctttctcgatcc 200  Q
    |||||||| || |||||||| ||||||||||||||||| ||||| |||||||||||||||||  ||||||||| |||||| ||||||||||||||||||     
T  14403315 gttgaagacgcgtagttctccgagaacacaacaagaaaaagagtggattgtttgattgctttaacaagttctgaccaaacatcatctcctttctcgatct 14403216  T
Q  201 tatagtctatgtaggtatgtaaataggttcgggaaagag 239  Q
    | |||||||||||||||||||||| ||||||| ||||||    
T  14403215 tgtagtctatgtaggtatgtaaatgggttcggcaaagag 14403177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 1 - 218
Target Start/End: Original strand, 5598377 - 5598594
Alignment:
Q  1 tgaagggtcaacatggtagaacacaggaataacaccaacgttgtcgtcttcatttttgttacggcactccattagttcaacaagttcattcaaacacaat 100  Q
    |||||||||||||||||| || |||||||| ||| |||||||||| || |||||||||||||  |||||||||| || ||| ||||| ||||||||| ||    
T  5598377 tgaagggtcaacatggtaaaaaacaggaatgacaacaacgttgtcatcctcatttttgttaccacactccattatttgaacgagttcgttcaaacaccat 5598476  T
Q  101 gttgaagaagcatagttctctgagaacacaacaagaaacagagttgattgtttgattgctttctcaagttctggccaaacttcatctcctttctcgatcc 200  Q
    |||||||| ||||||||||||||||||||||||||||||||||| |||| ||||||||||||  ||||||||| ||||||||||||||||||||||||||    
T  5598477 gttgaagatgcatagttctctgagaacacaacaagaaacagagtggattctttgattgctttaacaagttctgaccaaacttcatctcctttctcgatcc 5598576  T
Q  201 tatagtctatgtaggtat 218  Q
    |||| |||||||||||||    
T  5598577 tataatctatgtaggtat 5598594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 1 - 218
Target Start/End: Complemental strand, 5636898 - 5636681
Alignment:
Q  1 tgaagggtcaacatggtagaacacaggaataacaccaacgttgtcgtcttcatttttgttacggcactccattagttcaacaagttcattcaaacacaat 100  Q
    |||||||||||||||||| || |||||||| ||| |||||||||| || |||||||||||||  |||||||||| || ||| ||||| ||||||||| ||    
T  5636898 tgaagggtcaacatggtaaaaaacaggaatgacaacaacgttgtcatcctcatttttgttaccacactccattatttgaacgagttcgttcaaacaccat 5636799  T
Q  101 gttgaagaagcatagttctctgagaacacaacaagaaacagagttgattgtttgattgctttctcaagttctggccaaacttcatctcctttctcgatcc 200  Q
    |||||||| ||||||||||||||||||||||||||||||||||| |||| ||||||||||||  ||||||||| ||||||||||||||||||||||||||    
T  5636798 gttgaagatgcatagttctctgagaacacaacaagaaacagagtggattctttgattgctttaacaagttctgaccaaacttcatctcctttctcgatcc 5636699  T
Q  201 tatagtctatgtaggtat 218  Q
    |||| |||||||||||||    
T  5636698 tataatctatgtaggtat 5636681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 1 - 218
Target Start/End: Original strand, 6313668 - 6313885
Alignment:
Q  1 tgaagggtcaacatggtagaacacaggaataacaccaacgttgtcgtcttcatttttgttacggcactccattagttcaacaagttcattcaaacacaat 100  Q
    |||||||||||||||||||||||| ||||||||| |||| ||||| ||||||||||||||||  |||||||||| |||||||||||| ||||||||| ||    
T  6313668 tgaagggtcaacatggtagaacactggaataacaacaaccttgtcatcttcatttttgttacaacactccattatttcaacaagttcgttcaaacaccat 6313767  T
Q  101 gttgaagaagcatagttctctgagaacacaacaagaaacagagttgattgtttgattgctttctcaagttctggccaaacttcatctcctttctcgatcc 200  Q
    |||||||| |||||||| || |||||||| |||||||| | ||| |||||||||||||||||| | ||||||  ||||||||||||||||||||||||||    
T  6313768 gttgaagaggcatagttttccgagaacaccacaagaaatatagtggattgtttgattgctttcactagttctacccaaacttcatctcctttctcgatcc 6313867  T
Q  201 tatagtctatgtaggtat 218  Q
    | ||||||||||||||||    
T  6313868 tgtagtctatgtaggtat 6313885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 5624707 - 5624476
Alignment:
Q  1 tgaagggtcaacatggtagaacacaggaataacaccaacgttgtcgtcttcatttttgttacggcactccattagttcaacaagttcattcaaacacaat 100  Q
    |||||||||||||||||||||||||||||||||| |||| ||||| |||||||||||||||   |||||||||| || ||| ||||| ||||||||| ||    
T  5624707 tgaagggtcaacatggtagaacacaggaataacaacaacattgtcatcttcatttttgttattacactccattatttgaacgagttcgttcaaacaccat 5624608  T
Q  101 gttgaagaagcatagttctctgagaacacaacaagaaacagagttgattgtttgattgctttctcaagttctggccaaacttcatctcctttctcgatcc 200  Q
    ||||| || || |||||||| |||||||| |||||| ||||||| |||||||||||||||||| ||||||||| |||||||||||||||||||||||||     
T  5624607 gttgatgacgcgtagttctccgagaacaccacaagatacagagtggattgtttgattgctttcacaagttctgcccaaacttcatctcctttctcgatct 5624508  T
Q  201 tatagtctatgtaggtatgtaaataggttcgg 232  Q
    | | ||||||||||||||| | |||| |||||    
T  5624507 ttttgtctatgtaggtatggatatagtttcgg 5624476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 13164542 - 13164324
Alignment:
Q  1 tgaagggtcaacatggtagaacacaggaataacaccaacgttgtcgtcttcatttttgttacggcactccattagttcaacaagttcattcaaacacaat 100  Q
    |||||||||||||||||||||||||||||||||| ||||||| || | |||||| ||||| |  |||||||||| || ||| ||||| ||||||||| ||    
T  13164542 tgaagggtcaacatggtagaacacaggaataacaacaacgttatcattttcattgttgttgctacactccattatttgaactagttcgttcaaacaccat 13164443  T
Q  101 gttgaagaagcatagttctctgagaacacaacaagaaacagagttgattgtttgattgctttctcaagttctggccaaacttcatctcctttctcgatcc 200  Q
    |||||| | || ||||||||||||||||| |||||||| ||||| ||||  ||||||||||||| |||||||  |||||||||||||||||| |||||||    
T  13164442 gttgaaaatgcgtagttctctgagaacacgacaagaaaaagagtggattcattgattgctttctgaagttctccccaaacttcatctcctttttcgatcc 13164343  T
Q  201 tatagtctatgtaggtatg 219  Q
    | ||||||||||| |||||    
T  13164342 tgtagtctatgtatgtatg 13164324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 1 - 192
Target Start/End: Complemental strand, 5547692 - 5547495
Alignment:
Q  1 tgaagggtcaacatggtagaacacaggaataacaccaacgttgtcgtcttcatttttgttacgg------cactccattagttcaacaagttcattcaaa 94  Q
    |||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||  |       |||||||||  ||||| ||||| ||||||    
T  5547692 tgaagggtcaacatggtagaacacaggaataacaacaacgttgtcatcttcatttttgttaatgtcgaataactccattatctcaaccagttcgttcaaa 5547593  T
Q  95 cacaatgttgaagaagcatagttctctgagaacacaacaagaaacagagttgattgtttgattgctttctcaagttctggccaaacttcatctccttt 192  Q
    ||| |||||||||| || |||||||  |||||||| |||||||||| ||| |||||||| ||||| ||| ||||||||| |||||||| |||||||||    
T  5547592 caccatgttgaagatgcgtagttcttcgagaacacgacaagaaacaaagtggattgtttcattgccttcacaagttctgcccaaacttgatctccttt 5547495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 15 - 216
Target Start/End: Original strand, 12178726 - 12178924
Alignment:
Q  15 ggtagaacacaggaataacaccaacgttgtcgtcttcatttttgttacggcactccattagttcaacaagttcattcaaacacaatgttgaagaagcata 114  Q
    |||||||||||||||||||| |||||||||| || |||||||| ||   ||||| ||||| |||||| ||||||||||||||| |||||||||| |||||    
T  12178726 ggtagaacacaggaataacaacaacgttgtcttcgtcatttttttt---gcacttcattatttcaacgagttcattcaaacaccatgttgaagatgcata 12178822  T
Q  115 gttctctgagaacacaacaagaaacagagttgattgtttgattgctttctcaagttctggccaaacttcatctcctttctcgatcctatagtctatgtag 214  Q
    ||| |||||||||||||| | ||| | ||  |||  ||| |||||||| || ||||||  |||||| || |||||||| ||||| |||||||||||||||    
T  12178823 gttttctgagaacacaaccaaaaataaagcggatgctttaattgctttttctagttcttcccaaacctcttctcctttttcgattctatagtctatgtag 12178922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 15 - 216
Target Start/End: Original strand, 12423154 - 12423352
Alignment:
Q  15 ggtagaacacaggaataacaccaacgttgtcgtcttcatttttgttacggcactccattagttcaacaagttcattcaaacacaatgttgaagaagcata 114  Q
    |||||||||||||||||||| |||||||||| || |||||||| ||   ||||| ||||| |||||| ||||||||||||||| |||||||||| |||||    
T  12423154 ggtagaacacaggaataacaacaacgttgtcttcgtcatttttttt---gcacttcattatttcaacgagttcattcaaacaccatgttgaagatgcata 12423250  T
Q  115 gttctctgagaacacaacaagaaacagagttgattgtttgattgctttctcaagttctggccaaacttcatctcctttctcgatcctatagtctatgtag 214  Q
    ||| |||||||||||||| | ||| | ||  |||  ||| |||||||| || ||||||  |||||| || |||||||| ||||| |||||||||||||||    
T  12423251 gttttctgagaacacaaccaaaaataaagcggatgctttaattgctttttctagttcttcccaaacctcttctcctttttcgattctatagtctatgtag 12423350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 15 - 216
Target Start/End: Original strand, 12190421 - 12190619
Alignment:
Q  15 ggtagaacacaggaataacaccaacgttgtcgtcttcatttttgttacggcactccattagttcaacaagttcattcaaacacaatgttgaagaagcata 114  Q
    |||||||||||||||||||| |||||||||| || |||||||| ||   ||||| ||||| |||||| ||||||||||||||| |||||||||| |||||    
T  12190421 ggtagaacacaggaataacaacaacgttgtcttcgtcatttttttt---gcacttcattatttcaacgagttcattcaaacaccatgttgaagatgcata 12190517  T
Q  115 gttctctgagaacacaacaagaaacagagttgattgtttgattgctttctcaagttctggccaaacttcatctcctttctcgatcctatagtctatgtag 214  Q
    ||| |||||||||||||| | ||| | ||  |||  ||| |||||| | || ||||||  |||||| || |||||||| ||||| |||||||||||||||    
T  12190518 gttttctgagaacacaaccaaaaataaagcagatgctttaattgctctttctagttcttcccaaacctcttctcctttttcgattctatagtctatgtag 12190617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 15 - 216
Target Start/End: Original strand, 12434849 - 12435047
Alignment:
Q  15 ggtagaacacaggaataacaccaacgttgtcgtcttcatttttgttacggcactccattagttcaacaagttcattcaaacacaatgttgaagaagcata 114  Q
    |||||||||||||||||||| |||||||||| || |||||||| ||   ||||| ||||| |||||| ||||||||||||||| |||||||||| |||||    
T  12434849 ggtagaacacaggaataacaacaacgttgtcttcgtcatttttttt---gcacttcattatttcaacgagttcattcaaacaccatgttgaagatgcata 12434945  T
Q  115 gttctctgagaacacaacaagaaacagagttgattgtttgattgctttctcaagttctggccaaacttcatctcctttctcgatcctatagtctatgtag 214  Q
    ||| |||||||||||||| | ||| | ||  |||  ||| |||||| | || ||||||  |||||| || |||||||| ||||| |||||||||||||||    
T  12434946 gttttctgagaacacaaccaaaaataaagcagatgctttaattgctctttctagttcttcccaaacctcttctcctttttcgattctatagtctatgtag 12435045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 5 - 219
Target Start/End: Complemental strand, 32632822 - 32632617
Alignment:
Q  5 gggtcaacatggtagaacacaggaataacaccaacgttgtcgtcttcatttttgttacggcactccattagttcaacaagttcattcaaacacaatgttg 104  Q
    ||||||| |||||| ||||||||||||||| ||||||||||         ||||||||  |||||||||| |||||| ||||| ||||||||| ||||||    
T  32632822 gggtcaatatggtaaaacacaggaataacagcaacgttgtc---------tttgttactacactccattatttcaacgagttcgttcaaacaccatgttg 32632732  T
Q  105 aagaagcatagttctctgagaacacaacaagaaacagagttgattgtttgattgctttctcaagttctggccaaacttcatctcctttctcgatcctata 204  Q
    |||| ||||||||||  |||||||| || | ||| | ||| ||||||||||||||||||  |||||||| |||||| |  |||||||| | |||||| ||    
T  32632731 aagacgcatagttcttcgagaacactaccaaaaagatagtggattgtttgattgctttcgtaagttctgcccaaacatggtctcctttttggatcctgta 32632632  T
Q  205 gtctatgtaggtatg 219  Q
    ||||||||| |||||    
T  32632631 gtctatgtatgtatg 32632617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 63 - 192
Target Start/End: Complemental strand, 5562456 - 5562327
Alignment:
Q  63 ggcactccattagttcaacaagttcattcaaacacaatgttgaagaagcatagttctctgagaacacaacaagaaacagagttgattgtttgattgcttt 162  Q
    |||| ||||||| || ||| ||||||||||||||| |||||||||| || |||||||| |||||||| |||||||||| ||| |||||||| ||||| ||    
T  5562456 ggcattccattatttgaacgagttcattcaaacaccatgttgaagacgcgtagttctccgagaacacgacaagaaacaaagtggattgtttcattgcctt 5562357  T
Q  163 ctcaagttctggccaaacttcatctccttt 192  Q
    | ||||||||| ||||||||||||||||||    
T  5562356 cacaagttctgcccaaacttcatctccttt 5562327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 116 - 216
Target Start/End: Complemental strand, 5572853 - 5572753
Alignment:
Q  116 ttctctgagaacacaacaagaaacagagttgattgtttgattgctttctcaagttctggccaaacttcatctcctttctcgatcctatagtctatgtagg 215  Q
    ||||| |||||||| |||||||||| ||| || |  ||||||||||||   ||||||| |||||||||||||||||| | ||||||||||||||||||||    
T  5572853 ttctccgagaacacgacaagaaacaaagtggaatccttgattgctttcaagagttctgtccaaacttcatctcctttttggatcctatagtctatgtagg 5572754  T
Q  216 t 216  Q
    |    
T  5572753 t 5572753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 34
Target Start/End: Complemental strand, 5562505 - 5562473
Alignment:
Q  2 gaagggtcaacatggtagaacacaggaataaca 34  Q
    ||||||||||||||||||||||||||| |||||    
T  5562505 gaagggtcaacatggtagaacacaggattaaca 5562473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0363 (Bit Score: 151; Significance: 5e-80; HSPs: 1)
Name: scaffold0363
Description:

Target: scaffold0363; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 15438 - 15676
Alignment:
Q  1 tgaagggtcaacatggtagaacacaggaataacaccaacgttgtcgtcttcatttttgttacggcactccattagttcaacaagttcattcaaacacaat 100  Q
    ||||||||||||||||||||||||||||| |||| |||||||||| ||||||||||||||||  |||||||||| |||||| ||||| ||||||||| ||    
T  15438 tgaagggtcaacatggtagaacacaggaacaacaacaacgttgtcatcttcatttttgttactacactccattatttcaaccagttcgttcaaacaccat 15537  T
Q  101 gttgaagaagcatagttctctgagaacacaacaagaaacagagttgattgtttgattgctttctcaagttctggccaaacttcatctcctttctcgatcc 200  Q
    |||||||| || |||||||| ||||||||||||||||| ||||| |||||||||||||||||  ||||||||| |||||| ||||||||||||||||||     
T  15538 gttgaagacgcgtagttctccgagaacacaacaagaaaaagagtggattgtttgattgctttaacaagttctgaccaaacatcatctcctttctcgatct 15637  T
Q  201 tatagtctatgtaggtatgtaaataggttcgggaaagag 239  Q
    | |||||||||||||||||||||| ||||||| ||||||    
T  15638 tgtagtctatgtaggtatgtaaatgggttcggcaaagag 15676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.00000000009; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 65 - 171
Target Start/End: Original strand, 19496002 - 19496108
Alignment:
Q  65 cactccattagttcaacaagttcattcaaacacaatgttgaagaagcatagttctctgagaacacaacaagaaacagagttgattgtttgattgctttct 164  Q
    |||| ||||| |||||||||||||| ||||||| |  | |||   || ||||||||||||||||| || ||||| ||||||||||  || |||||||||     
T  19496002 cacttcattatttcaacaagttcatccaaacaccaactggaatccgcgtagttctctgagaacaccactagaaaaagagttgattcattcattgctttca 19496101  T
Q  165 caagttc 171  Q
    |||||||    
T  19496102 caagttc 19496108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 83 - 123
Target Start/End: Complemental strand, 16334795 - 16334755
Alignment:
Q  83 agttcattcaaacacaatgttgaagaagcatagttctctga 123  Q
    ||||||||||||||| || |||||||||||||||| |||||    
T  16334795 agttcattcaaacaccattttgaagaagcatagttttctga 16334755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 78 - 134
Target Start/End: Complemental strand, 17661045 - 17660989
Alignment:
Q  78 caacaagttcattcaaacacaatgttgaagaagcatagttctctgagaacacaacaa 134  Q
    ||||||||||||||||||| || ||||| ||||||||||| |  ||||| |||||||    
T  17661045 caacaagttcattcaaacaaaaagttgaggaagcatagttgttagagaaaacaacaa 17660989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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