View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1836_high_90 (Length: 254)
Name: NF1836_high_90
Description: NF1836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1836_high_90 |
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Alignment Details
Target: chr1 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 33329529 - 33329289
Alignment:
| Q |
1 |
tcaattattttgggatgtagctagggagtattacagtagaaataatttgtgttgcctttgtttgatcaaaggaaaacataatgtagttaaattgcacaaa |
100 |
Q |
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| T |
33329529 |
tcaattattttgggatgtagctagggagtattacagtagaaataatttgtgttgcctttgtttgatcaaagcaaaacataatgtagttaaattgcacaaa |
33329430 |
T |
|
| Q |
101 |
accctggcaatttctttgaaattgtttgcgaaataattgat--tgatgtgtagaaaaagtggtgacttatctttttatagttgactttttgtccattggc |
198 |
Q |
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|||||||||||||||||||||||||||| |||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33329429 |
accctggcaatttctttgaaattgtttgtgaaataattgattgtgatgtatagaaaaagtggtgacttatctttttatagttgactttttgtccattggc |
33329330 |
T |
|
| Q |
199 |
tttgcttgtgaagagttgcaaagaatagtttttagaccttt |
239 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |
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| T |
33329329 |
tttgcttgtgaagagttgcaaagaatagtttttagaccttt |
33329289 |
T |
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