View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1836_high_92 (Length: 250)
Name: NF1836_high_92
Description: NF1836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1836_high_92 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 12 - 250
Target Start/End: Original strand, 45682936 - 45683174
Alignment:
| Q |
12 |
atgaaaactttaccttaacaccagcctcagtgcataatctcacagcctctttgactccagggcgacaaggatcctggacattcagatgaaagaattttag |
111 |
Q |
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| T |
45682936 |
atgaaaactttaccttaacaccagcctcagtgcataatctcacagcctctttgactccagggcgacaaggatcctggacattcagatgaaagaattttag |
45683035 |
T |
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| Q |
112 |
aaggaatatacaggattaatttgaaagcataaagacaaagcgagctacagaacatgatacttaacaacaacatattatgtactaaagaataatttcaacc |
211 |
Q |
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| T |
45683036 |
aaggaatatacaggattaatttgaaagcataaagacaaagcgagctacagaacatgatacttaacaacaacatattatgtactaaagaataatttcaacc |
45683135 |
T |
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| Q |
212 |
tcacaacttttgatattaaaaactatcttagaatctacc |
250 |
Q |
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| T |
45683136 |
tcacaacttttgatattaaaaactatcttagtatctacc |
45683174 |
T |
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Target: chr4 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 21 - 87
Target Start/End: Complemental strand, 1444489 - 1444423
Alignment:
| Q |
21 |
ttaccttaacaccagcctcagtgcataatctcacagcctctttgactccagggcgacaaggatcctg |
87 |
Q |
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|||||||||||||||| |||||||||| |||||| || |||||||| |||||||||||||||||||| |
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| T |
1444489 |
ttaccttaacaccagcgtcagtgcatattctcacggcatctttgacaccagggcgacaaggatcctg |
1444423 |
T |
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