View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1836_low_10 (Length: 636)
Name: NF1836_low_10
Description: NF1836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1836_low_10 |
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Alignment Details
Target: chr7 (Bit Score: 224; Significance: 1e-123; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 140 - 477
Target Start/End: Complemental strand, 41772682 - 41772326
Alignment:
| Q |
140 |
ttcatttgattccaacaatttcaataactcaaattgcctatatggttggtggttgcaatcaaactttttctaactagtcat---caccatcatgaccttt |
236 |
Q |
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| T |
41772682 |
ttcatttgattccaa---tttcaataactcaaattgcctatatggttggtggttgcaatcaaactttttctaactagtcatattcaccatcatgaccttt |
41772586 |
T |
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| Q |
237 |
ctctagtatgtcccacgcttccttggacgaggtttcattctcaattttctataaattggtcgtaactcgatgctggaagaacaaagctttcaagtcttcc |
336 |
Q |
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| T |
41772585 |
ctctagtatgtcccacgcttccttggacgaggtttcattctcaattttctggaaattggtcgtaactcgatgctggaagaacaaagctttaaagtcttcc |
41772486 |
T |
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| Q |
337 |
ttc----tttgaatctttgtagattgcacacggagcataagttgcatcattatctac----ttgttatgaaccacctccatgacatcttaggaagctaaa |
428 |
Q |
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| T |
41772485 |
ttccttctttgaatctttgtagattgcacacggagcataagttgcatcattatctaactaattgttatgaaccacctccatgacatctt-ggaagctaaa |
41772387 |
T |
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| Q |
429 |
attcac-------------ctccattgatccccaattcttactatctagcatgagtagtttc |
477 |
Q |
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| T |
41772386 |
attcaccttcatttgtttactccattgat-cccaattcttactatctagcatgagtagtttc |
41772326 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 526 - 626
Target Start/End: Complemental strand, 41772313 - 41772214
Alignment:
| Q |
526 |
caacgcacaagaacaaagaaaacaacacttaaatcttgaagtttaggaccccatagcttgagacactctataccacctattggaacatgatcaaagaata |
625 |
Q |
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| T |
41772313 |
caacgcacaagaacaaagaaaacaacacttaaatcttgaagtttagg-ccccatagcttgagacactctataccacctattagaacttgatcaaagaata |
41772215 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 65 - 116
Target Start/End: Complemental strand, 41772731 - 41772680
Alignment:
| Q |
65 |
tagacacattttcatcacaacttttcatctggattgccaccgggtctaattc |
116 |
Q |
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| T |
41772731 |
tagacacattttcatcacaacttttcatctggattgccaccgggtctaattc |
41772680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 20 - 73
Target Start/End: Complemental strand, 41772792 - 41772744
Alignment:
| Q |
20 |
tttagttcttcagcttttatgactgctatgtaatcaaattttgattagacacat |
73 |
Q |
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| T |
41772792 |
tttagttcttcagcttttatgactg-----taatcaaattttgattagacacat |
41772744 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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