View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1836_low_102 (Length: 250)
Name: NF1836_low_102
Description: NF1836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1836_low_102 |
 | |
|
| [»] chr4 (1 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 10 - 250
Target Start/End: Original strand, 49010833 - 49011068
Alignment:
| Q |
10 |
agatgaatatcacttgaacaaaagtatgttgttgagtcgcactgggaacatcaataaagctttaccaccaggtatgggattgggatcaggttccagaaat |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49010833 |
agatgaatatcacttgaacaaaagtatgttgttgagtcgcactgggaacatcaataaagctttaccaccaggtatgggattgggatcaggttccagaaat |
49010932 |
T |
|
| Q |
110 |
aagattgcaatatgcaatcaccttggaagattggaaagtaataccataaatggtcctaaaataaattctgcataaattgactgacacttaagtctaatat |
209 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49010933 |
aagattataatatgcaatcaccttggaagattggaaagtaataccataaatggtcataaaataaattctgcataaattgactgacacttaagtctaatat |
49011032 |
T |
|
| Q |
210 |
gcaatcaccttgtagtattacattattttattctttctagc |
250 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||| |
|
|
| T |
49011033 |
gcaatcaccttgtagt-----attattttattctttctagc |
49011068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 129; Significance: 7e-67; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 55 - 230
Target Start/End: Original strand, 38183439 - 38183614
Alignment:
| Q |
55 |
gaacatcaataaagctttaccaccaggtatgggattgggatcaggttccagaaa-taagattgcaatatgcaatcaccttggaagattggaaagtaatac |
153 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||| ||||||||||||||| || ||||| ||||||||||||||||| ||||||| |||||||||| |
|
|
| T |
38183439 |
gaacatcaatagagctttaccaccaggtatgggattgg-atcaggttccagaaagtatgattgtaatatgcaatcaccttgtaagattgaaaagtaatac |
38183537 |
T |
|
| Q |
154 |
cataaatggtcctaaaataaattctgcataaattgactgacacttaagtctaatatgcaatcaccttgtagtattac |
230 |
Q |
| |
|
|||| |||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
38183538 |
catatatggtcctaaaacaaattctgcataaattgactgacacttacgtctaatatgcaatcaccttgtagtattac |
38183614 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University