View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1836_low_103 (Length: 250)
Name: NF1836_low_103
Description: NF1836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1836_low_103 |
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Alignment Details
Target: chr4 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 7 - 242
Target Start/End: Original strand, 340656 - 340895
Alignment:
| Q |
7 |
attccaatatgttttcctcaagtacgtgtatc---ttataaagcttgtatgttttggtttattgttttttctttaagtactttatatt-atccatatgca |
102 |
Q |
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| T |
340656 |
attccaatatgttttcctcaagtacgtgtatcatcttatagagcttgtatgtttttgtttattgttttttctttaagtactttatatccatccatatgca |
340755 |
T |
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| Q |
103 |
gttctcaaattttggtactcttgaacatcatggatttgcaaggaacaagttgtggaccttagatcctaatcctcctccctttccaacaaatagcaacagt |
202 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
340756 |
gttctcaaattttggtactcttgaacatcatggatttgcaaggaacaagttgtggatcttagatcctaatcctcctccctttccaacaaatagcaacagt |
340855 |
T |
|
| Q |
203 |
agagctttcgttgatttggttctcaaaaactctgatgatg |
242 |
Q |
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||||||||||||||||||||||||||||||||||| |||| |
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| T |
340856 |
agagctttcgttgatttggttctcaaaaactctgaagatg |
340895 |
T |
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