View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1836_low_107 (Length: 248)
Name: NF1836_low_107
Description: NF1836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1836_low_107 |
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Alignment Details
Target: chr3 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 17 - 239
Target Start/End: Original strand, 52761947 - 52762168
Alignment:
| Q |
17 |
agtatataaataatgctaattcagatagatgaagaacatctcaacattatggaaaatgtagtccgaagcgtcatcaagaatgcaaagtgagaaaggacaa |
116 |
Q |
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| T |
52761947 |
agtatataaataatgctaattcagatagatgaagaacatctcaacattatggaaaatgtagtccgaagcgtcataaagaatacaaagtgagaa-ggacaa |
52762045 |
T |
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| Q |
117 |
agattggtaattaaaggattcatacatctttgaattgaaaaaggccgagatcgccaaggtaagagatggatcgctgagctgattcaattggaatgatcaa |
216 |
Q |
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| T |
52762046 |
agattggtaattaaaggattcatacatctttgaattgaaaaaggccgagatcgccaaggtaagagatggatcgctgagctgattcaattggaatgatcaa |
52762145 |
T |
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| Q |
217 |
ttgaacaagttgcacaggttctg |
239 |
Q |
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|||||||||||||| |||||||| |
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| T |
52762146 |
ttgaacaagttgcataggttctg |
52762168 |
T |
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