View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1836_low_108 (Length: 247)
Name: NF1836_low_108
Description: NF1836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1836_low_108 |
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Alignment Details
Target: chr6 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 9 - 230
Target Start/End: Original strand, 2228611 - 2228832
Alignment:
| Q |
9 |
agcagagaagtggttgtttgcgaagaatgttccatgtctatggagattagaggcaacatgggagaaaacgaagaggcaatcttaaagaaacaccgcagtt |
108 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2228611 |
agcagaaaagtggttgtttgcgaagaatgttccatgtctatggagatcagaggcaacatgggagaaaacgaagaggcaatcttaaagaaacaccgcagtt |
2228710 |
T |
|
| Q |
109 |
cagggaagtgcgaccctagcaagaagaagaaaccgacttgccccgtgaagcgttgcaaggagattttgacgttttctaacacaagtacttgtaaaacttg |
208 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2228711 |
cagggaagtgtgaccctagcaagaagaagaaaccgacttgccctgtgaagcgttgcaaggagattttgacgttttctaacacaagtacttgtaaaacttg |
2228810 |
T |
|
| Q |
209 |
ccacattaaggtgtgtctcaag |
230 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
2228811 |
ccacattaaggtgtgtctcaag |
2228832 |
T |
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