View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1836_low_11 (Length: 634)
Name: NF1836_low_11
Description: NF1836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1836_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 592; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 592; E-Value: 0
Query Start/End: Original strand, 1 - 624
Target Start/End: Original strand, 28593346 - 28593969
Alignment:
| Q |
1 |
tcaccatcctactcatagtatccaaatcatttatcaatataaaaaccccttttgcagcagcatcaagttgttcacatagtctttcacaataagaacttct |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28593346 |
tcaccatcctactcatagtatccaaatcatttatcaatataaaaaccccttttgcagcagcatcaagttgttcacatagtctttcacaataagaacttct |
28593445 |
T |
|
| Q |
101 |
tcttaacctaattttgattttctttatgaacaaaccaactaaactacctacaatacttggtgcagccactaaccctactacactatgaaaagaaaccact |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
28593446 |
tcttaacctaattttgattttctttatgaacaaaccaaccaaactacctacaatacttggtgcagccactaaccctactacactatgaaaagaaaccact |
28593545 |
T |
|
| Q |
201 |
aataaagcaataagaatagcaccatgtgatgtaacaagagcaattcctccaactttcttgcaaaccctaatcaatgctaatcttctttgaatcttctttc |
300 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
28593546 |
aataaagcaataagaatggcaccatgtgatgtaacaagagcaattcctccaactttcttgcaaaccctaatcaatgctaatcttctttgaattttctttc |
28593645 |
T |
|
| Q |
301 |
tctttgatgttagtctatgaagaagttcaatgtacctattgtgaatattatcgaattgcattgtactaataacggacaaagggttgttttgtacttttga |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
28593646 |
tctttgatgttagtctatgaagaagttcaatgtacctattgtgaatattatcgaattgcattgtactaataacggacaaagggttgttttgtacttttga |
28593745 |
T |
|
| Q |
401 |
tgaaaatgaagcaagctctctatagatatctttctttgtttgttcatttagcacccttttgcttaacttaacaacttgtgtgattcttgtataagaaatt |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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|
| T |
28593746 |
tgaaaatgaagcaagctctctatagatatctttctttgtttgttcatttagcacccttttgcttaacttaacaactcgtgtgattcttgtataagaaatt |
28593845 |
T |
|
| Q |
501 |
cttgttgagtgaattccttcaaggattgtgtcacaacaacgacttgcttctaagctagcgtcgaaatagttaactagaagatgatgcaccttaaagtttc |
600 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||| |
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|
| T |
28593846 |
cttgttgagtggattccttcaaggattgtgtcacaacaacgacttgcttctaagctagcatcgaaatagttaactagaagatcatgcaccttaaagtttc |
28593945 |
T |
|
| Q |
601 |
gtgtcatgtttgttatgatttcat |
624 |
Q |
| |
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|| ||||||||||||||||||||| |
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|
| T |
28593946 |
gtctcatgtttgttatgatttcat |
28593969 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 400; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 1 - 622
Target Start/End: Complemental strand, 8358227 - 8357618
Alignment:
| Q |
1 |
tcaccatcctactcatagtatccaaatcatttatcaatataaaaaccccttttgcagcagcatcaagttgttcacatagtctttcacaataagaacttct |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||| || |
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|
| T |
8358227 |
tcaccatcctactcatagtatccaaatcatttatcaatataaaaacccctttcgcagcagcatcaagttgttcacatagtctttcgcaattag------- |
8358135 |
T |
|
| Q |
101 |
tcttaacctaattttgattttctttatgaacaaaccaactaaactacctacaatacttggtgcagccactaaccctactacactatgaaaagaaaccact |
200 |
Q |
| |
|
|| ||| |||| ||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||| || ||||||||||||||||||||| |
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|
| T |
8358134 |
--tt---ctattttttattctctttatgaacaaaccaactaaaccacctacaatacttggtgcagccactaacccaacaacactatgaaaagaaaccact |
8358040 |
T |
|
| Q |
201 |
aataaagcaataagaatagcaccatgtgatgtaacaagagcaattcctccaactttcttgcaaaccctaatcaatgctaatcttctttgaatcttctttc |
300 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||| ||| ||| |
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|
| T |
8358039 |
aataaagcaataagaatagcagcatgtgatgtaacaagagcaattcctccaactttcttgcaaacactaatcaatgttaatcttctttgaattttccttc |
8357940 |
T |
|
| Q |
301 |
tctttgatgttagtctatgaagaagttcaatgtacctattgtgaatattatcgaattgcattgtactaataacggacaaagggttgttttgtacttttga |
400 |
Q |
| |
|
|||||||||||||| | ||||||||||| |||||||||||| |||| | || ||||||||||||||||||||| |||||||| |||||||||| |||||| |
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|
| T |
8357939 |
tctttgatgttagtttttgaagaagttccatgtacctattgcgaatgtcatggaattgcattgtactaataacagacaaaggattgttttgtaattttga |
8357840 |
T |
|
| Q |
401 |
tgaaaatgaagcaagctctctatagatatctttctttgtttgttcatttagcacccttttgcttaacttaacaacttgtgtgattcttgtataagaaatt |
500 |
Q |
| |
|
|| |||| ||||||| |||||||||||||||||||||||| ||||||| | ||||||||||||||||||||||| | || | ||||||||||||||| | |
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|
| T |
8357839 |
tggaaataaagcaagttctctatagatatctttctttgttggttcattaatcacccttttgcttaacttaacaaatcgtttagttcttgtataagaaagt |
8357740 |
T |
|
| Q |
501 |
cttgttgagtgaattccttcaaggattgtgtcacaacaacgacttgcttctaagctagcgtcgaaatagttaactagaagatgatgcaccttaaagtttc |
600 |
Q |
| |
|
||||||| ||| ||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||| |||||||||||||||||||||||| ||| |
|
|
| T |
8357739 |
cttgttgcgtggattccttcaaggattgtgtcacaacaacgacatgcttctaagctagcttcgaaatagtcaactagaagatgatgcaccttaaaatttt |
8357640 |
T |
|
| Q |
601 |
gtgtcatgtttgttatgatttc |
622 |
Q |
| |
|
|||||||||||||||| ||||| |
|
|
| T |
8357639 |
gtgtcatgtttgttattatttc |
8357618 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 54; Significance: 1e-21; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 12 - 89
Target Start/End: Complemental strand, 53447787 - 53447710
Alignment:
| Q |
12 |
ctcatagtatccaaatcatttatcaatataaaaaccccttttgcagcagcatcaagttgttcacatagtctttcacaa |
89 |
Q |
| |
|
||||||||||||||||||||||||| |||| ||||||||||||||||| |||||| ||||||| ||||| |||||||| |
|
|
| T |
53447787 |
ctcatagtatccaaatcatttatcactatataaaccccttttgcagcaacatcaatttgttcatatagtttttcacaa |
53447710 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 516 - 596
Target Start/End: Complemental strand, 53447259 - 53447179
Alignment:
| Q |
516 |
ccttcaaggattgtgtcacaacaacgacttgcttctaagctagcgtcgaaatagttaactagaagatgatgcaccttaaag |
596 |
Q |
| |
|
|||| ||||||| |||| |||||| || |||||||||||| || || || |||| |||||||||||||||||||||||| |
|
|
| T |
53447259 |
ccttgaaggattttgtcgcaacaaagatatgcttctaagctggcttcaaagtagtccactagaagatgatgcaccttaaag |
53447179 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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