View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1836_low_114 (Length: 238)
Name: NF1836_low_114
Description: NF1836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1836_low_114 |
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Alignment Details
Target: chr6 (Bit Score: 86; Significance: 3e-41; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 20 - 206
Target Start/End: Original strand, 10816653 - 10816861
Alignment:
| Q |
20 |
atagagagaaaacaagaagaaattaaatgaattgaat-----cttttttgaacaatgtacaaagagtatcctattta---gcttagctaaatctaacaaa |
111 |
Q |
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| T |
10816653 |
atagagagaaaactacaagaaattaaatgaattgaattgaatctgttttgaacaatgtacaa-gagtatcctatttataggcttagctaaatctaaccaa |
10816751 |
T |
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| Q |
112 |
ctttctatcggttag---------------ttagataactctaactaattccttaactaactaattacagagttaatcaatttctattatatttccacaa |
196 |
Q |
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| T |
10816752 |
ccttctatcggttagttagacaactcttagttagataactctaactaatttcttaactaactaattacatagttaatcaatttctcttatatttccacaa |
10816851 |
T |
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| Q |
197 |
caacataaga |
206 |
Q |
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|||||||||| |
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| T |
10816852 |
caacataaga |
10816861 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 182 - 221
Target Start/End: Original strand, 10822580 - 10822619
Alignment:
| Q |
182 |
attatatttccacaacaacataagaatgcattattgttat |
221 |
Q |
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| T |
10822580 |
attatatttctacaacaacataagaatgcattattgttat |
10822619 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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