View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1836_low_115 (Length: 238)
Name: NF1836_low_115
Description: NF1836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1836_low_115 |
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Alignment Details
Target: chr8 (Bit Score: 177; Significance: 2e-95; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 19 - 215
Target Start/End: Original strand, 25251199 - 25251395
Alignment:
| Q |
19 |
ttaccagtagcatggcttgttggaggcgattcataacgcacctccgttattcaacccatcaatctccatggcaggttagttattattattactcatttcc |
118 |
Q |
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| T |
25251199 |
ttaccagtagcatggcttgttggaggcgattcataatgcacctccgttattcaacccatcaatctccatggcaggttagttattattattactcatttcc |
25251298 |
T |
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| Q |
119 |
tttattcaattttcacttacactttgtttcatcatcacattcacttgcgtcattttctcaaattattaatcatgtccacttgtcaatgtcgtctctg |
215 |
Q |
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| T |
25251299 |
tttatacaattttcacttacacattgtttcatcatcacattcacttgcgtcattttctcaaattattaatcatgtccacttgtcagtgtcgtgtctg |
25251395 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 170; Significance: 2e-91; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 19 - 215
Target Start/End: Original strand, 48138524 - 48138721
Alignment:
| Q |
19 |
ttaccagtagcatggcttgttggaggcgattcataacgcacctccgttattcaacccatcaatctccatggcaggttagttattattattactcatttcc |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48138524 |
ttaccagtagcatggcttgttggaggcgattcataacgcacctccgttattcaacccatcaatctccatggcaggttagttattattattactcatttcc |
48138623 |
T |
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| Q |
119 |
tttattcaattttcacttacactttgtttcatcatcacattcacttgcgtcattttctcaaattattaatcatgt-ccacttgtcaatgtcgtctctg |
215 |
Q |
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| T |
48138624 |
tttatacaattttcacttacacattgtttcatcatcacattcacttgcgtcattttctcaaattattaaccatgtcccacttgtcagtgtcgtgtctg |
48138721 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 29 - 134
Target Start/End: Complemental strand, 48126369 - 48126262
Alignment:
| Q |
29 |
catggcttgttggaggcgattcataacgcacctccgttattcaacccatcaatctccatggcaggttagt---tattattattactcatttcctttattc |
125 |
Q |
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||||||||||||||| || |||||||| | ||||||||||||||||||||| ||||| ||||||||||| ||||||||||| ||| ||||||||| | |
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| T |
48126369 |
catggcttgttggagacgtttcataacaaaactccgttattcaacccatcaacctccaaggcaggttagttactattattattattca-ttcctttatac |
48126271 |
T |
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| Q |
126 |
aattttcac |
134 |
Q |
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||||||||| |
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| T |
48126270 |
aattttcac |
48126262 |
T |
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