View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1836_low_119 (Length: 235)
Name: NF1836_low_119
Description: NF1836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1836_low_119 |
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Alignment Details
Target: chr2 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 3 - 222
Target Start/End: Complemental strand, 20422110 - 20421890
Alignment:
| Q |
3 |
ttgtgttcctagttggttagaaagtatcgaagatatatcaccagaaatattccaaaaacagactgagatgactgaaattatctccaaatt-ctcattcat |
101 |
Q |
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| T |
20422110 |
ttgtgttcctagttggttagaaagtatcgaagatgtatcaccagaaatattcctaaaacagactgagatgactgaaattatctccaaatttctcattcat |
20422011 |
T |
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| Q |
102 |
atagacaaagcaattatacttgaaagtcctaacaaagagaaaaaggttactgggaatgaaaagtgtcaaattgaaaccacgaggtttaaaactgcacatc |
201 |
Q |
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| T |
20422010 |
acaaacaaagcaattatacttgaaagtcctaacaaagagaaaaaggttactgggaatgaaaagtgtcaaattgaaaccacgaggtttaaaactgcacatc |
20421911 |
T |
|
| Q |
202 |
aattttctgagatgctatctg |
222 |
Q |
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||||||||||||||||||||| |
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| T |
20421910 |
aattttctgagatgctatctg |
20421890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 129; Significance: 7e-67; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 90 - 222
Target Start/End: Original strand, 9883904 - 9884036
Alignment:
| Q |
90 |
attctcattcatatagacaaagcaattatacttgaaagtcctaacaaagagaaaaaggttactgggaatgaaaagtgtcaaattgaaaccacgaggttta |
189 |
Q |
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| T |
9883904 |
attcttattcatatagacaaagcaattatacttgaaagtcctaacaaagagaaaaaggttactgggaatgaaaagtgtcaaattgaaaccacgaggttta |
9884003 |
T |
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| Q |
190 |
aaactgcacatcaattttctgagatgctatctg |
222 |
Q |
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| T |
9884004 |
aaactgcacatcaattttctgagatgctatctg |
9884036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 61; Significance: 3e-26; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 51 - 152
Target Start/End: Complemental strand, 15607853 - 15607747
Alignment:
| Q |
51 |
attccaaaaacagactgagatgac--tgaaattatctccaaatt-ctcattcat--atagacaaagcaattatacttgaaagtcctaacaaagagaaaaa |
145 |
Q |
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||||| |||||||||||||||||| |||||||||||||||||| ||||||| | | ||||||||||||| |||||||||||||||||||||||||||| |
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| T |
15607853 |
attcctaaaacagactgagatgacagtgaaattatctccaaatttctcattcctgcacagacaaagcaattgtacttgaaagtcctaacaaagagaaaaa |
15607754 |
T |
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| Q |
146 |
ggttact |
152 |
Q |
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||||||| |
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| T |
15607753 |
ggttact |
15607747 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 182 - 218
Target Start/End: Complemental strand, 15607744 - 15607708
Alignment:
| Q |
182 |
gaggtttaaaactgcacatcaattttctgagatgcta |
218 |
Q |
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|||||||||||||||||||| ||||||||||| |||| |
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| T |
15607744 |
gaggtttaaaactgcacatcgattttctgagaagcta |
15607708 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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