View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1836_low_123 (Length: 227)
Name: NF1836_low_123
Description: NF1836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1836_low_123 |
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Alignment Details
Target: chr5 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 212
Target Start/End: Complemental strand, 14694585 - 14694369
Alignment:
| Q |
1 |
taatatttgtccaaatacaattaactctctagt-----aaaacctcatatcaatatgtttgatcatggcatgatacacttgactatttatcaaataaatg |
95 |
Q |
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| T |
14694585 |
taatatttgtccaaatgcaattaactctttagtcttgtaaaacctcatatcaatatgtttgatcatggcatgatacacttgactatttatcaaataaatg |
14694486 |
T |
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| Q |
96 |
gcactcgaactatcacaatgtgtgtgaactccgtcttgcccaacatcaaatccctccaccaatcatgtaagccaaaagaggcctctttggcaacatcgtc |
195 |
Q |
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| T |
14694485 |
gcactcgaactatcacaatgtgtgtgaactccgtcttgcccaacatcaaatccctccaccaatcatgtaagccaaaagaggcctctttggcaacatcgtc |
14694386 |
T |
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| Q |
196 |
tatagccatgtactctt |
212 |
Q |
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||||||||||||||||| |
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| T |
14694385 |
tatagccatgtactctt |
14694369 |
T |
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Target: chr2 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 32 - 115
Target Start/End: Complemental strand, 34726980 - 34726897
Alignment:
| Q |
32 |
gtaaaacctcatatcaatatgtttgatcatggcatgatacacttgactatttatcaaataaatggcactcgaactatcacaatg |
115 |
Q |
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| T |
34726980 |
gtaaaaactcacatcaatatgcttggttttggcatgatacacttgattatttttcaaataaatgacactataactatcacaatg |
34726897 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 35 - 115
Target Start/End: Complemental strand, 32985545 - 32985465
Alignment:
| Q |
35 |
aaacctcatatcaatatgtttgatcatggcatgatacacttgactatttatcaaataaatggcactcgaactatcacaatg |
115 |
Q |
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| T |
32985545 |
aaaccttacatcaatatgcttgatattggcatgatacacttgattgtttgtcaaataaatgacactctgactatcacaatg |
32985465 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 35 - 112
Target Start/End: Complemental strand, 9838339 - 9838262
Alignment:
| Q |
35 |
aaacctcatatcaatatgtttgatcatggcatgatacacttgactatttatcaaataaatggcactcgaactatcaca |
112 |
Q |
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||||||| ||||||||| ||| || ||||||||||||||||| ||||| |||||||||| ||||| |||||||||| |
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| T |
9838339 |
aaacctcgcatcaatatgcttggtcttggcatgatacacttgattatttgccaaataaatgacactccaactatcaca |
9838262 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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