View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1836_low_127 (Length: 223)

Name: NF1836_low_127
Description: NF1836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1836_low_127
NF1836_low_127
[»] chr5 (15 HSPs)
chr5 (21-204)||(30678398-30678581)
chr5 (21-207)||(30059050-30059236)
chr5 (21-193)||(4380426-4380598)
chr5 (21-135)||(30339752-30339866)
chr5 (10-125)||(29870937-29871052)
chr5 (21-125)||(30243609-30243713)
chr5 (21-135)||(30748405-30748519)
chr5 (21-125)||(29852061-29852165)
chr5 (21-125)||(30434584-30434688)
chr5 (21-125)||(30482166-30482270)
chr5 (126-205)||(30398863-30398942)
chr5 (21-106)||(30398776-30398861)
chr5 (21-86)||(30482094-30482159)
chr5 (22-205)||(30205204-30205387)
chr5 (164-208)||(30474211-30474255)
[»] chr7 (1 HSPs)
chr7 (21-207)||(26706025-26706211)
[»] chr4 (2 HSPs)
chr4 (21-187)||(20297850-20298016)
chr4 (24-116)||(20303875-20303967)


Alignment Details
Target: chr5 (Bit Score: 148; Significance: 3e-78; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 21 - 204
Target Start/End: Complemental strand, 30678581 - 30678398
Alignment:
Q  21 gtgtcgaataccctccgggaagcatcgcaatccttcacaattacgaatctttagagttcgaagggattgaagacctccccaatttttctctggtaaggac 120  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||    
T  30678581 gtgtcgaataccctccggcaagcatcgcaatccttcacaattacgaatctttagagttcgaagggattgaagaccttcccaattttgctctggtaaggac 30678482  T
Q  121 tccaactcattacaataacagatatacagatccgtcaaagctgggttaaagggttcatttggtaactgcttcaattttgggaaa 204  Q
    ||||||||||||||||||  |||| |||||| ||||||||||||||||||||||||||||||||||| ||||| ||||||||||    
T  30678481 tccaactcattacaataagtgatacacagatgcgtcaaagctgggttaaagggttcatttggtaactccttcagttttgggaaa 30678398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 21 - 207
Target Start/End: Original strand, 30059050 - 30059236
Alignment:
Q  21 gtgtcgaataccctccgggaagcatcgcaatccttcacaattacgaatctttagagttcgaagggattgaagacctccccaatttttctctggtaaggac 120  Q
    |||||||||||||||||| || |||||||||||||||||  ||  ||| | ||||||||||||||||||||||||| ||||||||| |||||||||||||    
T  30059050 gtgtcgaataccctccggcaaacatcgcaatccttcacagctataaatatgtagagttcgaagggattgaagaccttcccaattttgctctggtaaggac 30059149  T
Q  121 tccaactcattacaataacagatatacagatccgtcaaagctgggttaaagggttcatttggtaactgcttcaattttgggaaatta 207  Q
    |||||||||||||||||||||||| |||||  |||||||||||||||||||| |||||||||||||| ||||| |||||||||||||    
T  30059150 tccaactcattacaataacagatacacagaagcgtcaaagctgggttaaaggtttcatttggtaactccttcagttttgggaaatta 30059236  T

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Target: chr5; HSP #3
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 21 - 193
Target Start/End: Original strand, 4380426 - 4380598
Alignment:
Q  21 gtgtcgaataccctccgggaagcatcgcaatccttcacaattacgaatctttagagttcgaagggattgaagacctccccaatttttctctggtaaggac 120  Q
    |||||||||||||||||| ||||||||||||||||  ||||  | |||| ||||||| | |||||||||||||||| | ||||||| |||||||||||||    
T  4380426 gtgtcgaataccctccggcaagcatcgcaatcctttgcaatcccaaatcgttagagtcctaagggattgaagaccttctcaattttgctctggtaaggac 4380525  T
Q  121 tccaactcattacaataacagatatacagatccgtcaaagctgggttaaagggttcatttggtaactgcttca 193  Q
    || | ||||||||||| | ||||||||| || |||||||| ||| |||||||||||||||||||||| |||||    
T  4380526 tcaagctcattacaatcatagatatacaaatgcgtcaaagttggtttaaagggttcatttggtaactccttca 4380598  T

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Target: chr5; HSP #4
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 21 - 135
Target Start/End: Complemental strand, 30339866 - 30339752
Alignment:
Q  21 gtgtcgaataccctccgggaagcatcgcaatccttcacaattacgaatctttagagttcgaagggattgaagacctccccaatttttctctggtaaggac 120  Q
    |||||||||||||||||| ||||||||||||||||||||  ||  ||||| ||||||||||||||||||||||||| ||||||||| |||||||||||||    
T  30339866 gtgtcgaataccctccggcaagcatcgcaatccttcacagctataaatctgtagagttcgaagggattgaagaccttcccaattttgctctggtaaggac 30339767  T
Q  121 tccaactcattacaa 135  Q
    |||||||||||||||    
T  30339766 tccaactcattacaa 30339752  T

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Target: chr5; HSP #5
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 10 - 125
Target Start/End: Original strand, 29870937 - 29871052
Alignment:
Q  10 agtgaaatgaagtgtcgaataccctccgggaagcatcgcaatccttcacaattacgaatctttagagttcgaagggattgaagacctccccaatttttct 109  Q
    |||||| ||| |||||||||||||||||| ||||||||||||||||||||||| | |||| ||| | |||||||||||||||||||| ||||||||| ||    
T  29870937 agtgaagtgaggtgtcgaataccctccggcaagcatcgcaatccttcacaattccaaatccttaaaattcgaagggattgaagaccttcccaattttgct 29871036  T
Q  110 ctggtaaggactccaa 125  Q
    ||||||||||||||||    
T  29871037 ctggtaaggactccaa 29871052  T

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Target: chr5; HSP #6
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 21 - 125
Target Start/End: Complemental strand, 30243713 - 30243609
Alignment:
Q  21 gtgtcgaataccctccgggaagcatcgcaatccttcacaattacgaatctttagagttcgaagggattgaagacctccccaatttttctctggtaaggac 120  Q
    |||||||||||||||||| ||||||||||||||||||||  || |||||||||||  ||||||||||||||||||| |||||||| ||||||||||||||    
T  30243713 gtgtcgaataccctccggcaagcatcgcaatccttcacatctatgaatctttagaaatcgaagggattgaagaccttcccaatttgtctctggtaaggac 30243614  T
Q  121 tccaa 125  Q
    |||||    
T  30243613 tccaa 30243609  T

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Target: chr5; HSP #7
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 21 - 135
Target Start/End: Original strand, 30748405 - 30748519
Alignment:
Q  21 gtgtcgaataccctccgggaagcatcgcaatccttcacaattacgaatctttagagttcgaagggattgaagacctccccaatttttctctggtaaggac 120  Q
    |||||||||||||||||| |||||||||||||||  ||||   | ||||| ||||| ||||||||||||||||||| |||| |||| |||||||||||||    
T  30748405 gtgtcgaataccctccggcaagcatcgcaatcctctacaaccccaaatctgtagagctcgaagggattgaagaccttcccagttttgctctggtaaggac 30748504  T
Q  121 tccaactcattacaa 135  Q
    |||||||||||||||    
T  30748505 tccaactcattacaa 30748519  T

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Target: chr5; HSP #8
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 21 - 125
Target Start/End: Original strand, 29852061 - 29852165
Alignment:
Q  21 gtgtcgaataccctccgggaagcatcgcaatccttcacaattacgaatctttagagttcgaagggattgaagacctccccaatttttctctggtaaggac 120  Q
    ||||| |||||||||||| ||||||| |||||||| |||||    ||||  ||||||||||||||||||||||||| ||||||||| |||||||||||||    
T  29852061 gtgtccaataccctccggcaagcatctcaatcctttacaatatataatccgtagagttcgaagggattgaagaccttcccaattttgctctggtaaggac 29852160  T
Q  121 tccaa 125  Q
    |||||    
T  29852161 tccaa 29852165  T

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Target: chr5; HSP #9
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 21 - 125
Target Start/End: Original strand, 30434584 - 30434688
Alignment:
Q  21 gtgtcgaataccctccgggaagcatcgcaatccttcacaattacgaatctttagagttcgaagggattgaagacctccccaatttttctctggtaaggac 120  Q
    |||||||||||||||||| |||||||||||||||  ||||   | ||||  ||||| ||||||||||||||||||| |||| |||| |||||||||||||    
T  30434584 gtgtcgaataccctccggcaagcatcgcaatcctctacaaccccaaatcagtagagctcgaagggattgaagaccttcccagttttgctctggtaaggac 30434683  T
Q  121 tccaa 125  Q
    |||||    
T  30434684 tccaa 30434688  T

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Target: chr5; HSP #10
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 21 - 125
Target Start/End: Original strand, 30482166 - 30482270
Alignment:
Q  21 gtgtcgaataccctccgggaagcatcgcaatccttcacaattacgaatctttagagttcgaagggattgaagacctccccaatttttctctggtaaggac 120  Q
    |||||||||||||||||| ||||||| |||||||  |||| |   ||| | ||||| ||||||||||||||||||| ||||||||| |||||||||||||    
T  30482166 gtgtcgaataccctccggcaagcatctcaatcctctacaactcgaaatgtgtagagctcgaagggattgaagaccttcccaattttgctctggtaaggac 30482265  T
Q  121 tccaa 125  Q
    |||||    
T  30482266 tccaa 30482270  T

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Target: chr5; HSP #11
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 126 - 205
Target Start/End: Original strand, 30398863 - 30398942
Alignment:
Q  126 ctcattacaataacagatatacagatccgtcaaagctgggttaaagggttcatttggtaactgcttcaattttgggaaat 205  Q
    ||||||||||| | |||||  ||||| |||||||||| ||||||||||||||||| |||||| ||||| | |||||||||    
T  30398863 ctcattacaatcagagatacgcagatgcgtcaaagcttggttaaagggttcattttgtaactccttcagtgttgggaaat 30398942  T

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Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 21 - 106
Target Start/End: Original strand, 30398776 - 30398861
Alignment:
Q  21 gtgtcgaataccctccgggaagcatcgcaatccttcacaattacgaatctttagagttcgaagggattgaagacctccccaatttt 106  Q
    ||||| |||||||||||| |||||||||||| ||| |||||||  ||| | ||||  | |||||||||| |||||| |||||||||    
T  30398776 gtgtctaataccctccggaaagcatcgcaattctttacaattagaaatatatagatattgaagggattgcagaccttcccaatttt 30398861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 21 - 86
Target Start/End: Original strand, 30482094 - 30482159
Alignment:
Q  21 gtgtcgaataccctccgggaagcatcgcaatccttcacaattacgaatctttagagttcgaaggga 86  Q
    |||||||||||||||||| |||||||||||||||| |||  ||  ||||| |||| ||||||||||    
T  30482094 gtgtcgaataccctccggcaagcatcgcaatcctttacagctataaatctgtagatttcgaaggga 30482159  T

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Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 22 - 205
Target Start/End: Original strand, 30205204 - 30205387
Alignment:
Q  22 tgtcgaataccctccgggaagcatcgcaatccttcacaattacgaatctttagagttcgaagggattgaagacctccccaatttttctctggtaaggact 121  Q
    ||||||||||| ||||| ||||||| || | ||| ||||  || ||| | ||||||||| |||||||| |||||| ||||| ||| || |||||| ||||    
T  30205204 tgtcgaataccttccggtaagcatctcagttctttacaacgacaaatatctagagttcggagggattgcagaccttcccaaatttcctttggtaaagact 30205303  T
Q  122 ccaactcattacaataacagatatacagatccgtcaaagctgggttaaagggttcatttggtaactgcttcaattttgggaaat 205  Q
    | | ||||| |||  || ||||   ||||| |  || | || || |||| |||||||||||||||| ||||| |||||| ||||    
T  30205304 caagctcatcacatgaagagattatcagatgctccataactaggctaaatggttcatttggtaactccttcacttttggaaaat 30205387  T

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Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 208
Target Start/End: Original strand, 30474211 - 30474255
Alignment:
Q  164 ggttaaagggttcatttggtaactgcttcaattttgggaaattag 208  Q
    |||| ||||||||||||||||  | ||||||||||||||||||||    
T  30474211 ggttgaagggttcatttggtagtttcttcaattttgggaaattag 30474255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 99; Significance: 5e-49; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 21 - 207
Target Start/End: Original strand, 26706025 - 26706211
Alignment:
Q  21 gtgtcgaataccctccgggaagcatcgcaatccttcacaattacgaatctttagagttcgaagggattgaagacctccccaatttttctctggtaaggac 120  Q
    ||||||||||||||| || |||||||||| ||||| |||||  | ||||| |||||| | |||||||||||||||| ||||  |||||||||||| ||||    
T  26706025 gtgtcgaataccctctggcaagcatcgcattcctttacaatcccaaatctctagagtcctaagggattgaagaccttcccacattttctctggtagggac 26706124  T
Q  121 tccaactcattacaataacagatatacagatccgtcaaagctgggttaaagggttcatttggtaactgcttcaattttgggaaatta 207  Q
    || | ||||||||||| | |||||||||||| ||||||||||||||||||||||||||||||||||| |||||  ||||||||||||    
T  26706125 tcaatctcattacaattatagatatacagatgcgtcaaagctgggttaaagggttcatttggtaactccttcagatttgggaaatta 26706211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 83; Significance: 2e-39; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 21 - 187
Target Start/End: Complemental strand, 20298016 - 20297850
Alignment:
Q  21 gtgtcgaataccctccgggaagcatcgcaatccttcacaattacgaatctttagagttcgaagggattgaagacctccccaatttttctctggtaaggac 120  Q
    |||| ||||||||||||| |||||| ||||||||| ||||| || |||   ||||||||||||||||||||||||| ||||| ||| |||||||||||||    
T  20298016 gtgttgaataccctccggcaagcattgcaatcctttacaataactaattcctagagttcgaagggattgaagaccttcccaaatttgctctggtaaggac 20297917  T
Q  121 tccaactcattacaataacagatatacagatccgtcaaagctgggttaaagggttcatttggtaact 187  Q
    |||||||||  ||||  | |||||| |||||   |||||||||||||||||||||||||||||||||    
T  20297916 tccaactcacgacaacgagagatatccagatgtttcaaagctgggttaaagggttcatttggtaact 20297850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 24 - 116
Target Start/End: Complemental strand, 20303967 - 20303875
Alignment:
Q  24 tcgaataccctccgggaagcatcgcaatccttcacaattacgaatctttagagttcgaagggattgaagacctccccaatttttctctggtaa 116  Q
    ||||||||| || || ||||||| |||||||| |||| |||||||| | | ||||| ||||||||  |||||| ||||| |||||||||||||    
T  20303967 tcgaataccttcaggcaagcatctcaatcctttacaactacgaatcatcatagttctaagggatttcagaccttcccaaattttctctggtaa 20303875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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