View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1836_low_128 (Length: 222)
Name: NF1836_low_128
Description: NF1836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1836_low_128 |
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| [»] scaffold0161 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 172; Significance: 1e-92; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 18 - 205
Target Start/End: Original strand, 32456764 - 32456951
Alignment:
| Q |
18 |
gaaacaatgaacgttgctctatgacaatgcactacacctttcggagacgaagtcgttccggaggtgtagtttaacgtaattggatcccactctgagtcag |
117 |
Q |
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| T |
32456764 |
gaaacaatgaacgttgctctgtgacaatgcactacacctttcggagacgacgtcgttccggaggtgtagtttaacgtaattggatcccactctgagtcag |
32456863 |
T |
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| Q |
118 |
gtcgaatccatttgaaatatggatcaccctttgctgcaagaccctcataggtgttgataatgtttacgttttttggaagtggaggaat |
205 |
Q |
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| T |
32456864 |
gtcggatccatttgaaatatggatcaccctttgctacaagaccctcataggtgttgataatgtttacgttttttggaagtggaggaat |
32456951 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 17 - 205
Target Start/End: Complemental strand, 32464372 - 32464184
Alignment:
| Q |
17 |
ggaaacaatgaacgttgctctatgacaatgcactacacctttcggagacgaagtcgttccggaggtgtagtttaacgtaattggatcccactctgagtca |
116 |
Q |
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| T |
32464372 |
ggaaacaatgaacgttgctctatgacaatgcactacacctttcggagatgaagtcgttccggaggtgtagtttaacgtaataggatcccactctgagtta |
32464273 |
T |
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| Q |
117 |
ggtcgaatccatttgaaatatggatcaccctttgctgcaagaccctcataggtgttgataatgtttacgttttttggaagtggaggaat |
205 |
Q |
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| T |
32464272 |
ggttgaatccatttgaaatttggatcaccttttgttacaagaccctcataggtgttgataatgtttacgttttttggaagtggaggaat |
32464184 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0161 (Bit Score: 92; Significance: 8e-45; HSPs: 1)
Name: scaffold0161
Description:
Target: scaffold0161; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 18 - 198
Target Start/End: Complemental strand, 23801 - 23615
Alignment:
| Q |
18 |
gaaacaatgaacgttgctctatgacaatgcactacacctttcggagacgaagtcgttccggaggtgtagtttaacgtaattggatcccactctgagtcag |
117 |
Q |
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|||||||||||||||||||| ||||||||||| |||||||| |||||||| || ||||||||||||||||| | |||||||||||||||||| | ||| | |
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| T |
23801 |
gaaacaatgaacgttgctctgtgacaatgcacaacaccttttggagacgacgttgttccggaggtgtagttcagcgtaattggatcccactcggtgtcgg |
23702 |
T |
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| Q |
118 |
gtcgaatccatttgaaatatggatcaccctttgctgcaagaccc------tcataggtgttgataatgtttacgttttttggaagtg |
198 |
Q |
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| T |
23701 |
gacggatccatttgaaatttggatcaccctttgctacaagactctcgtagtcgtaggtgttcataatgtttatgttttttggaagtg |
23615 |
T |
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