View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1836_low_129 (Length: 217)
Name: NF1836_low_129
Description: NF1836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1836_low_129 |
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Alignment Details
Target: chr4 (Bit Score: 160; Significance: 2e-85; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 8 - 207
Target Start/End: Complemental strand, 26121324 - 26121130
Alignment:
| Q |
8 |
tgacttctttgtttctcaatatattacctcaattcgtctcctcccttttgctggacccaagactcaggtttcattttcatcaaagattatatctttcatt |
107 |
Q |
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| T |
26121324 |
tgacttctttgtttctcaatctattacctcaattcgtctcctcccttttgctggacccaagactcaggtttcattttcatcaaagattatatctttcatt |
26121225 |
T |
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| Q |
108 |
tttaaagtttgggtcttctcttaaattttaaggtcatgcatgatttatgttgactcgaaatttaatttatatcttttgactttactgtttttgttctgtg |
207 |
Q |
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| T |
26121224 |
ttttaaatttgggtcttctcttaaattttaaggtcttgcatgatttatgttgactcgaaa-----tttatatcttttgactttactgtttttgttttgtg |
26121130 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 8 - 207
Target Start/End: Complemental strand, 26128751 - 26128561
Alignment:
| Q |
8 |
tgacttctttgtttctcaatatattacctcaattcgtctcctcccttttgctggacccaagactcaggtttcattttcatcaaagatta--tatctttca |
105 |
Q |
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| T |
26128751 |
tgacttctttgcttctcaatccattacctcaattcgtctcttcccttttgctggacccaagacccaggtttctttttcatcaaagattatttatctttcg |
26128652 |
T |
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| Q |
106 |
tttttaaagtttgggtcttctcttaaattttaaggtcatgcatgatttatgttgactcgaaatttaatttatatcttttgactttactgtttttgttctg |
205 |
Q |
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| T |
26128651 |
tgtt-----tttctttcat-ttttaaattttaaggtcttgcatgatttttgttgactcca-----aatttatatcttttgactttactgtttttgttttg |
26128563 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 8 - 96
Target Start/End: Complemental strand, 26111797 - 26111709
Alignment:
| Q |
8 |
tgacttctttgtttctcaatatattacctcaattcgtctcctcccttttgctggacccaagactcaggtttcattttcatcaaagatta |
96 |
Q |
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| T |
26111797 |
tgacttctttgtttctcaatctattacctcaattcgtcacctacctgttgctgtacccaagacccaggtttcattttcatcaaagatta |
26111709 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 8 - 89
Target Start/End: Complemental strand, 26085460 - 26085379
Alignment:
| Q |
8 |
tgacttctttgtttctcaatatattacctcaattcgtctcctcccttttgctggacccaagactcaggtttcattttcatca |
89 |
Q |
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| T |
26085460 |
tgacttctttgtttctcaatctattacctcaattcgtcacctacctgttgctgtacccaagacccaggtttcattttcatca |
26085379 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 9 - 96
Target Start/End: Complemental strand, 26056222 - 26056135
Alignment:
| Q |
9 |
gacttctttgtttctcaatatattacctcaattcgtctcctcccttttgctggacccaagactcaggtttcattttcatcaaagatta |
96 |
Q |
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| T |
26056222 |
gacttctttgtttctcagtctattacctcaaatcgtcacctacctgttgctgtacccaagacccaggtttcattttcatcaaagatta |
26056135 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 9 - 96
Target Start/End: Complemental strand, 26067884 - 26067797
Alignment:
| Q |
9 |
gacttctttgtttctcaatatattacctcaattcgtctcctcccttttgctggacccaagactcaggtttcattttcatcaaagatta |
96 |
Q |
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| T |
26067884 |
gacttctttgtttctcagtctattacctcaaatcgtcacctacctgttgctgtacccaagacccaggtttcattttcatcaaagatta |
26067797 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 11 - 163
Target Start/End: Complemental strand, 26038315 - 26038150
Alignment:
| Q |
11 |
cttctttgtttctcaatatattacctcaattcgtctcctcccttttgctggacccaagactcaggtttcattttcatcaaagattata------------ |
98 |
Q |
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| T |
26038315 |
cttctttgtttctcaatctattacatcaaatcgtcgcatcgctgttgttggatccaaaacccaggttttattttcatcaaagattgtagcttttgtgttt |
26038216 |
T |
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| Q |
99 |
-tctttcatttttaaagtttgggtcttctcttaaattttaaggtcatgcatgatttatgttgactc |
163 |
Q |
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| T |
26038215 |
ttctttcatttttgaattttgggtcttgtcttgaattttaagctcttgcatgattttcgttgactc |
26038150 |
T |
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