View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1836_low_131 (Length: 215)

Name: NF1836_low_131
Description: NF1836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1836_low_131
NF1836_low_131
[»] chr4 (9 HSPs)
chr4 (12-201)||(22186645-22186839)
chr4 (12-101)||(56135780-56135869)
chr4 (12-130)||(4437549-4437661)
chr4 (49-129)||(54576490-54576575)
chr4 (12-97)||(29993895-29993980)
chr4 (12-93)||(43961449-43961530)
chr4 (60-118)||(16400809-16400872)
chr4 (64-101)||(49735499-49735536)
chr4 (50-102)||(37761495-37761547)
[»] chr5 (4 HSPs)
chr5 (12-101)||(34980841-34980930)
chr5 (12-97)||(5688448-5688533)
chr5 (12-101)||(10204607-10204696)
chr5 (64-134)||(20147051-20147121)
[»] chr7 (7 HSPs)
chr7 (49-133)||(48881720-48881799)
chr7 (12-101)||(37925872-37925961)
chr7 (12-101)||(33519079-33519168)
chr7 (12-101)||(36267677-36267766)
chr7 (12-101)||(37620805-37620894)
chr7 (15-81)||(35422015-35422081)
chr7 (19-101)||(48013534-48013615)
[»] chr2 (9 HSPs)
chr2 (12-101)||(34187606-34187695)
chr2 (12-98)||(2381111-2381197)
chr2 (49-101)||(31928210-31928262)
chr2 (12-93)||(31061398-31061479)
chr2 (49-100)||(1270439-1270490)
chr2 (12-119)||(22355983-22356085)
chr2 (12-83)||(45098218-45098289)
chr2 (12-101)||(17333935-17334025)
chr2 (12-85)||(45257354-45257427)
[»] chr3 (10 HSPs)
chr3 (12-96)||(10943738-10943822)
chr3 (12-119)||(26135810-26135917)
chr3 (12-130)||(34640999-34641112)
chr3 (12-119)||(46978445-46978547)
chr3 (12-100)||(41414110-41414198)
chr3 (12-93)||(40858604-40858685)
chr3 (59-101)||(25655001-25655043)
chr3 (12-85)||(16884095-16884168)
chr3 (49-101)||(44412522-44412574)
chr3 (12-97)||(48683647-48683732)
[»] chr8 (6 HSPs)
chr8 (12-119)||(8815265-8815377)
chr8 (12-130)||(30365127-30365250)
chr8 (12-97)||(12022267-12022352)
chr8 (12-119)||(40633113-40633224)
chr8 (64-101)||(2248628-2248665)
chr8 (61-102)||(11575579-11575620)
[»] chr1 (6 HSPs)
chr1 (64-130)||(41676457-41676523)
chr1 (49-129)||(525261-525346)
chr1 (49-98)||(51303418-51303467)
chr1 (12-85)||(1085614-1085687)
chr1 (65-129)||(20607221-20607285)
chr1 (12-85)||(33643315-33643388)
[»] scaffold0119 (2 HSPs)
scaffold0119 (12-100)||(37415-37503)
scaffold0119 (49-100)||(30747-30798)
[»] chr6 (2 HSPs)
chr6 (12-101)||(23091026-23091115)
chr6 (12-111)||(26318327-26318425)
[»] scaffold0026 (1 HSPs)
scaffold0026 (49-97)||(1559-1607)
[»] scaffold0012 (1 HSPs)
scaffold0012 (65-129)||(184609-184668)


Alignment Details
Target: chr4 (Bit Score: 134; Significance: 6e-70; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 134; E-Value: 6e-70
Query Start/End: Original strand, 12 - 201
Target Start/End: Complemental strand, 22186839 - 22186645
Alignment:
Q  12 ataatacttcaaaaacactttatttattttnnnnnnncattttacgttgtttgtaatataaaaattaaaagtgaac-----cctcccctcccttcttaaa 106  Q
    ||||||||||||||||||||||||||||||       |||||||||||||||||||| ||||||||||||||||||     |||||| ||||||| ||||    
T  22186839 ataatacttcaaaaacactttatttattttaaaaaaacattttacgttgtttgtaatttaaaaattaaaagtgaactctgccctcccttcccttcctaaa 22186740  T
Q  107 ccctcaatccaaatacatcctaaatgtatcattcctgtctttgcattgaataactcaaagcaacataatttctcataagtttttctcatatattt 201  Q
    ||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22186739 ccctcaatccaaatacaccctaaatatatcattcctgtctttgcattgaataactcaaagcaacataatttctcataagtttttctcatatattt 22186645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 12 - 101
Target Start/End: Complemental strand, 56135869 - 56135780
Alignment:
Q  12 ataatacttcaaaaacactttatttattttnnnnnnncattttacgttgtttgtaatataaaaattaaaagtgaaccctcccctcccttc 101  Q
    |||||||||||||||||||| |||||||||       |||||||| ||||| ||||| |||||| ||||| |||||||||||||||||||    
T  56135869 ataatacttcaaaaacacttaatttattttaaaaaaacattttacattgttcgtaatttaaaaaataaaaatgaaccctcccctcccttc 56135780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 12 - 130
Target Start/End: Original strand, 4437549 - 4437661
Alignment:
Q  12 ataatacttcaaaaacactttatttattttnnnnnnncattttacgttgtttgtaatataaaaattaaaagtgaaccctcccctcccttcttaaaccctc 111  Q
    |||||||||||||||||||| |||||||||       |||||||| |||||| |||| |||||| ||||| |||||||||||||||     |||||| ||    
T  4437549 ataatacttcaaaaacacttgatttatttttaaaaa-cattttacattgtttttaatttaaaaaataaaaatgaaccctcccctcc-----taaaccttc 4437642  T
Q  112 aatccaaatacatcctaaa 130  Q
    |||||||| ||| ||||||    
T  4437643 aatccaaacacaccctaaa 4437661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 49 - 129
Target Start/End: Original strand, 54576490 - 54576575
Alignment:
Q  49 cattttacgttgtttgtaatataaaaattaaaagtgaaccctcccctccct-----tcttaaaccctcaatccaaatacatcctaa 129  Q
    |||||||||||||| ||||| |||||||||||||||||| || | ||||||     ||||||||||| |||||||| ||| |||||    
T  54576490 cattttacgttgttcgtaatttaaaaattaaaagtgaactcttctctcccttcctctcttaaacccttaatccaaacacaccctaa 54576575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 12 - 97
Target Start/End: Original strand, 29993895 - 29993980
Alignment:
Q  12 ataatacttcaaaaacactttatttattttnnnnnnncattttacgttgtttgtaatataaaaattaaaagtgaaccctcccctcc 97  Q
    ||||||||||||||| |||| || ||||||       | |||||| ||||| ||||| |||||| |||||||||||||||||||||    
T  29993895 ataatacttcaaaaatacttaatctattttaaaaaaactttttacattgttcgtaatttaaaaagtaaaagtgaaccctcccctcc 29993980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 12 - 93
Target Start/End: Complemental strand, 43961530 - 43961449
Alignment:
Q  12 ataatacttcaaaaacactttatttattttnnnnnnncattttacgttgtttgtaatataaaaattaaaagtgaaccctccc 93  Q
    |||||||||||||||||||| |||||||||       |||||||| |||||  |||| |||||| ||||||||| |||||||    
T  43961530 ataatacttcaaaaacacttaatttattttaaaaaaacattttacattgttcataatttaaaaaataaaagtgagccctccc 43961449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 60 - 118
Target Start/End: Complemental strand, 16400872 - 16400809
Alignment:
Q  60 gtttgtaatataaaaattaaaagtgaaccctcccctcccttct-----taaaccctcaatccaa 118  Q
    ||||||| |||||||| |||||||||| |||||||||||||||     ||||||||||||||||    
T  16400872 gtttgtagtataaaaaataaaagtgaatcctcccctcccttctcctcctaaaccctcaatccaa 16400809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 64 - 101
Target Start/End: Complemental strand, 49735536 - 49735499
Alignment:
Q  64 gtaatataaaaattaaaagtgaaccctcccctcccttc 101  Q
    ||||| ||||||| ||||||||||||||||||||||||    
T  49735536 gtaatttaaaaatgaaaagtgaaccctcccctcccttc 49735499  T

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Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 50 - 102
Target Start/End: Complemental strand, 37761547 - 37761495
Alignment:
Q  50 attttacgttgtttgtaatataaaaattaaaagtgaaccctcccctcccttct 102  Q
    |||||| |||||| ||||| |||||||||||||||||| || |||||| ||||    
T  37761547 attttatgttgttcgtaatttaaaaattaaaagtgaactctaccctcctttct 37761495  T

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Target: chr5 (Bit Score: 49; Significance: 3e-19; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 12 - 101
Target Start/End: Complemental strand, 34980930 - 34980841
Alignment:
Q  12 ataatacttcaaaaacactttatttattttnnnnnnncattttacgttgtttgtaatataaaaattaaaagtgaaccctcccctcccttc 101  Q
    |||||||||||||||||||| |||||||||        ||||||||||||| ||||| ||||||||||||||||||||| ||||||||||    
T  34980930 ataatacttcaaaaacacttaatttattttaaaaaaatattttacgttgttcgtaatttaaaaattaaaagtgaacccttccctcccttc 34980841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 12 - 97
Target Start/End: Complemental strand, 5688533 - 5688448
Alignment:
Q  12 ataatacttcaaaaacactttatttattttnnnnnnncattttacgttgtttgtaatataaaaattaaaagtgaaccctcccctcc 97  Q
    |||||||||||||||||||| || ||||||       |||||||| ||||| ||||| |||||| |||||||||||||||||||||    
T  5688533 ataatacttcaaaaacacttaatctattttaaaaaaacattttacattgttcgtaatttaaaaaataaaagtgaaccctcccctcc 5688448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 12 - 101
Target Start/End: Complemental strand, 10204696 - 10204607
Alignment:
Q  12 ataatacttcaaaaacactttatttattttnnnnnnncattttacgttgtttgtaatataaaaattaaaagtgaaccctcccctcccttc 101  Q
    |||||||||||||||||||| |||||||||       |||||||| ||||| ||||| |||||| ||||||||| ||||| |||||||||    
T  10204696 ataatacttcaaaaacacttaatttattttaaaaagacattttacattgttggtaatttaaaaaataaaagtgagccctcacctcccttc 10204607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 64 - 134
Target Start/End: Original strand, 20147051 - 20147121
Alignment:
Q  64 gtaatataaaaattaaaagtgaaccctcccctcccttcttaaaccctcaatccaaatacatcctaaatgta 134  Q
    ||||| ||||||| |||||| ||||||||| |||| || ||||||||||||||||| ||| ||| ||||||    
T  20147051 gtaatttaaaaatgaaaagtaaaccctcccttcccctcctaaaccctcaatccaaacacacccttaatgta 20147121  T

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Target: chr7 (Bit Score: 45; Significance: 8e-17; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 49 - 133
Target Start/End: Original strand, 48881720 - 48881799
Alignment:
Q  49 cattttacgttgtttgtaatataaaaattaaaagtgaaccctcccctcccttcttaaaccctcaatccaaatacatcctaaatgt 133  Q
    |||||||||||||||||||| ||||||||||||||||||| ||||||||     ||||||||||||||||| ||| ||| |||||    
T  48881720 cattttacgttgtttgtaatttaaaaattaaaagtgaaccttcccctcc-----taaaccctcaatccaaacacacccttaatgt 48881799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 12 - 101
Target Start/End: Complemental strand, 37925961 - 37925872
Alignment:
Q  12 ataatacttcaaaaacactttatttattttnnnnnnncattttacgttgtttgtaatataaaaattaaaagtgaaccctcccctcccttc 101  Q
    |||||||||||||||||||| || |||||        |||||||| ||||| ||||| |||||| |||||||||||||||||||||||||    
T  37925961 ataatacttcaaaaacacttaatctatttaaaaaaaacattttacattgttcgtaatttaaaaaataaaagtgaaccctcccctcccttc 37925872  T

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Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 12 - 101
Target Start/End: Complemental strand, 33519168 - 33519079
Alignment:
Q  12 ataatacttcaaaaacactttatttattttnnnnnnncattttacgttgtttgtaatataaaaattaaaagtgaaccctcccctcccttc 101  Q
    |||||||||||||||||||| ||||||||        |||||||  ||||| ||||| |||||| ||||||||| |||||||||||||||    
T  33519168 ataatacttcaaaaacacttaatttatttcaaaaaaacattttatattgttcgtaatttaaaaaataaaagtgagccctcccctcccttc 33519079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 12 - 101
Target Start/End: Original strand, 36267677 - 36267766
Alignment:
Q  12 ataatacttcaaaaacactttatttattttnnnnnnncattttacgttgtttgtaatataaaaattaaaagtgaaccctcccctcccttc 101  Q
    ||||||||||||||||||||  | ||||||       |||||||| ||| ||||||| |||||| ||||| ||| |||||||||||||||    
T  36267677 ataatacttcaaaaacacttactatattttgaaaaaacattttacattggttgtaatttaaaaaataaaaatgagccctcccctcccttc 36267766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 12 - 101
Target Start/End: Complemental strand, 37620894 - 37620805
Alignment:
Q  12 ataatacttcaaaaacactttatttattttnnnnnnncattttacgttgtttgtaatataaaaattaaaagtgaaccctcccctcccttc 101  Q
    ||||||||||||||||| || |||||||||       |||||||| |||||  |||| | ||||| |||||||||| |||||||||||||    
T  37620894 ataatacttcaaaaacatttaatttattttaaaaaatcattttacattgttcataatttgaaaataaaaagtgaactctcccctcccttc 37620805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 15 - 81
Target Start/End: Complemental strand, 35422081 - 35422015
Alignment:
Q  15 atacttcaaaaacactttatttattttnnnnnnncattttacgttgtttgtaatataaaaattaaaa 81  Q
    ||||||||||||||||| |||||||||       |||||||| ||||||||||| |||||| |||||    
T  35422081 atacttcaaaaacacttaatttattttaaaaaaacattttacattgtttgtaatttaaaaaataaaa 35422015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 19 - 101
Target Start/End: Complemental strand, 48013615 - 48013534
Alignment:
Q  19 ttcaaaaacactttatttattttnnnnnnncattttacgttgtttgtaatataaaaattaaaagtgaaccctcccctcccttc 101  Q
    ||||||||||||| |||||||||       |||||||| ||||| ||||| |||||| |||||| |||| |||||||||||||    
T  48013615 ttcaaaaacacttaatttattttaaaaaaacattttacattgttcgtaatttaaaaa-taaaagcgaacgctcccctcccttc 48013534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 45; Significance: 8e-17; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 12 - 101
Target Start/End: Complemental strand, 34187695 - 34187606
Alignment:
Q  12 ataatacttcaaaaacactttatttattttnnnnnnncattttacgttgtttgtaatataaaaattaaaagtgaaccctcccctcccttc 101  Q
    |||||||||||||||||||| |||||||||       ||| |||||||||| ||||| ||||||||||||||||||| |||||| |||||    
T  34187695 ataatacttcaaaaacacttaatttattttaataaaacatcttacgttgttcgtaatttaaaaattaaaagtgaaccttccccttccttc 34187606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 12 - 98
Target Start/End: Original strand, 2381111 - 2381197
Alignment:
Q  12 ataatacttcaaaaacactttatttattttnnnnnnncattttacgttgtttgtaatataaaaattaaaagtgaaccctcccctccc 98  Q
    |||||||||||||||||||| |||||||||       |||||||| ||||| ||||| |||||| ||||||||||| ||||||||||    
T  2381111 ataatacttcaaaaacacttaatttattttaaaaaaacattttacattgttcgtaatttaaaaaataaaagtgaactctcccctccc 2381197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 49 - 101
Target Start/End: Original strand, 31928210 - 31928262
Alignment:
Q  49 cattttacgttgtttgtaatataaaaattaaaagtgaaccctcccctcccttc 101  Q
    |||||||| ||||||||||| |||||||||||||||| ||||||| |||||||    
T  31928210 cattttacattgtttgtaatttaaaaattaaaagtgagccctcccttcccttc 31928262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 12 - 93
Target Start/End: Complemental strand, 31061479 - 31061398
Alignment:
Q  12 ataatacttcaaaaacactttatttattttnnnnnnncattttacgttgtttgtaatataaaaattaaaagtgaaccctccc 93  Q
    |||||| ||||||||||||| |||||||||       |||||||| ||||| ||||| |||||| ||||||||| |||||||    
T  31061479 ataatatttcaaaaacacttaatttattttaaaaacacattttacattgttcgtaatttaaaaaataaaagtgagccctccc 31061398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 49 - 100
Target Start/End: Original strand, 1270439 - 1270490
Alignment:
Q  49 cattttacgttgtttgtaatataaaaattaaaagtgaaccctcccctccctt 100  Q
    |||||||| ||||| ||||| |||||| ||||||||| ||||||||||||||    
T  1270439 cattttacattgttcgtaatttaaaaaataaaagtgagccctcccctccctt 1270490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 119
Target Start/End: Complemental strand, 22356085 - 22355983
Alignment:
Q  12 ataatacttcaaaaacactttatttattttnnnnnnncattttacgttgtttgtaatataaaaattaaaagtgaaccctcccctcccttcttaaaccctc 111  Q
    |||||||||||||||||||| || ||||||       |||||||| ||||| ||||| |||||| ||||| |||| | |||||     ||||||||||||    
T  22356085 ataatacttcaaaaacacttaatctattttaaaaaaacattttacattgttcgtaatttaaaaaataaaaatgaatcatcccc-----tcttaaaccctc 22355991  T
Q  112 aatccaaa 119  Q
    ||||||||    
T  22355990 aatccaaa 22355983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 83
Target Start/End: Complemental strand, 45098289 - 45098218
Alignment:
Q  12 ataatacttcaaaaacactttatttattttnnnnnnncattttacgttgtttgtaatataaaaattaaaagt 83  Q
    |||||||||||||||||||| |||||||||       |||||||| || |||||||| |||||| |||||||    
T  45098289 ataatacttcaaaaacacttaatttattttaaaaatacattttacattatttgtaatgtaaaaaataaaagt 45098218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 12 - 101
Target Start/End: Original strand, 17333935 - 17334025
Alignment:
Q  12 ataatacttcaaaaacactttatttattttnnnnnnncattttacgttgtttgtaa-tataaaaattaaaagtgaaccctcccctcccttc 101  Q
    |||||||||||||||||||| |||||||||       |||||||| |||||||||| |  ||||| |||||||||  |||||||| |||||    
T  17333935 ataatacttcaaaaacacttaatttattttaaaaagacattttacattgtttgtaacttaaaaaaataaaagtgagtcctccccttccttc 17334025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 85
Target Start/End: Complemental strand, 45257427 - 45257354
Alignment:
Q  12 ataatacttcaaaaacactttatttattttnnnnnnncattttacgttgtttgtaatataaaaattaaaagtga 85  Q
    |||||||||||||||||||| |||||||||       |||||||| ||||| ||||| || ||| |||||||||    
T  45257427 ataatacttcaaaaacacttaatttattttaagaaaacattttacattgttcgtaatttataaaataaaagtga 45257354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 3e-16; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 12 - 96
Target Start/End: Original strand, 10943738 - 10943822
Alignment:
Q  12 ataatacttcaaaaacactttatttattttnnnnnnncattttacgttgtttgtaatataaaaattaaaagtgaaccctcccctc 96  Q
    |||||||||||||||||||| |||||||||       |||||| | ||||| ||||| |||||||||||||||||||||||||||    
T  10943738 ataatacttcaaaaacacttaatttattttaaaaaaacattttgcattgttcgtaatttaaaaattaaaagtgaaccctcccctc 10943822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 12 - 119
Target Start/End: Complemental strand, 26135917 - 26135810
Alignment:
Q  12 ataatacttcaaaaacactttatttattttnnnnnnncattttacgttgtttgtaatataaaaattaaaagtgaaccctcccctcccttcttaaaccctc 111  Q
    |||||||||||||||||||| |||||||||       |||||||| |||||  |||| |||||| |||||||||  |||||| || |||| |||||||||    
T  26135917 ataatacttcaaaaacacttaatttatttttaaaaaacattttacattgttcataatttaaaaaataaaagtgagtcctcccttctcttcctaaaccctc 26135818  T
Q  112 aatccaaa 119  Q
    ||||||||    
T  26135817 aatccaaa 26135810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 12 - 130
Target Start/End: Complemental strand, 34641112 - 34640999
Alignment:
Q  12 ataatacttcaaaaacactttatttattttnnnnnnncattttacgttgtttgtaatataaaaattaaaagtgaaccctcccctcccttcttaaaccctc 111  Q
    |||||||||||||||||||| |||||||||       | |||||| ||||| ||||| |||||| ||||||||| |||||||||||     |||||||||    
T  34641112 ataatacttcaaaaacacttaatttattttaaaaaatccttttacattgttcgtaatttaaaaaataaaagtgagccctcccctcc-----taaaccctc 34641018  T
Q  112 aatccaaatacatcctaaa 130  Q
    |||||||| ||| ||||||    
T  34641017 aatccaaacacaccctaaa 34640999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 12 - 119
Target Start/End: Complemental strand, 46978547 - 46978445
Alignment:
Q  12 ataatacttcaaaaacactttatttattttnnnnnnncattttacgttgtttgtaatataaaaattaaaagtgaaccctcccctcccttcttaaaccctc 111  Q
    ||||||||||||||||| || |||||||||       ||||||||   ||| ||||| ||||||||||||||||||||||||||||     |||||||||    
T  46978547 ataatacttcaaaaacatttaatttattttaaaaaaacattttacaccgttcgtaatttaaaaattaaaagtgaaccctcccctcc-----taaaccctc 46978453  T
Q  112 aatccaaa 119  Q
    ||||||||    
T  46978452 aatccaaa 46978445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 12 - 100
Target Start/End: Complemental strand, 41414198 - 41414110
Alignment:
Q  12 ataatacttcaaaaacactttatttattttnnnnnnncattttacgttgtttgtaatataaaaattaaaagtgaaccctcccctccctt 100  Q
    |||||||||||||||| ||| |||||||||       |||||||| |||||  |||| |||||| ||||||||| ||||||||||||||    
T  41414198 ataatacttcaaaaacgcttgatttattttaaaaaaacattttaccttgttcataatttaaaaaataaaagtgagccctcccctccctt 41414110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 12 - 93
Target Start/End: Complemental strand, 40858685 - 40858604
Alignment:
Q  12 ataatacttcaaaaacactttatttattttnnnnnnncattttacgttgtttgtaatataaaaattaaaagtgaaccctccc 93  Q
    |||||||||||||||||||  |||||||||       |||||||| ||||| ||||| |||||| ||||||||| |||||||    
T  40858685 ataatacttcaaaaacactaaatttattttaaaaaaacattttacattgttcgtaatttaaaaaataaaagtgagccctccc 40858604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 59 - 101
Target Start/End: Complemental strand, 25655043 - 25655001
Alignment:
Q  59 tgtttgtaatataaaaattaaaagtgaaccctcccctcccttc 101  Q
    |||| ||||||||||||| |||||| |||||||||||||||||    
T  25655043 tgttcgtaatataaaaatgaaaagtaaaccctcccctcccttc 25655001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 85
Target Start/End: Original strand, 16884095 - 16884168
Alignment:
Q  12 ataatacttcaaaaacactttatttattttnnnnnnncattttacgttgtttgtaatataaaaattaaaagtga 85  Q
    |||||||||||||||||||| |||||||||       |||||||| ||||| ||||  |||||| |||||||||    
T  16884095 ataatacttcaaaaacacttaatttattttaaaaagacattttacattgttcgtaacttaaaaaataaaagtga 16884168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 101
Target Start/End: Original strand, 44412522 - 44412574
Alignment:
Q  49 cattttacgttgtttgtaatataaaaattaaaagtgaaccctcccctcccttc 101  Q
    |||||||| ||||| ||||| |||||| |||||||||  ||||||||||||||    
T  44412522 cattttacattgttcgtaatttaaaaaataaaagtgagtcctcccctcccttc 44412574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 97
Target Start/End: Complemental strand, 48683732 - 48683647
Alignment:
Q  12 ataatacttcaaaaacactttatttattttnnnnnnncattttacgttgtttgtaatataaaaattaaaagtgaaccctcccctcc 97  Q
    |||||| ||||||||||||| |||||||||       |||||||| ||||| ||||| ||| || |||||||||  ||||||||||    
T  48683732 ataatatttcaaaaacacttaatttattttaaaaaaacattttacattgttcgtaatttaagaaataaaagtgagtcctcccctcc 48683647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 12 - 119
Target Start/End: Original strand, 8815265 - 8815377
Alignment:
Q  12 ataatacttcaaaaacactttatttattttnnnnnnncattttacgttgtttgtaatataaaaattaaaagtgaaccctcccctccct-----tcttaaa 106  Q
    |||||||||||||||||||||| ||  |||       ||||||||  |||| ||||| ||||||||||||||||||||||||||||||     || ||||    
T  8815265 ataatacttcaaaaacactttaatttatttgaaaaaacattttacagtgttcgtaatttaaaaattaaaagtgaaccctcccctccctccccctcctaaa 8815364  T
Q  107 ccctcaatccaaa 119  Q
    |||||||||||||    
T  8815365 ccctcaatccaaa 8815377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 12 - 130
Target Start/End: Complemental strand, 30365250 - 30365127
Alignment:
Q  12 ataatacttcaaaaacactttatttattttnnnnnnncattttacgttgtttgtaatataaaaattaaaagtgaaccctcccctcccttct-----taaa 106  Q
    |||| ||||||||||||||| ||||||| |        |||||| |||||| ||||| |||||||||||||||||| ||||||||| ||||     ||||    
T  30365250 ataacacttcaaaaacacttaatttattctaaaaaaatattttatgttgttcgtaatttaaaaattaaaagtgaactctcccctcctttctcctcctaaa 30365151  T
Q  107 ccctcaatccaaatacatcctaaa 130  Q
    ||||||||||||| ||| ||||||    
T  30365150 ccctcaatccaaacacaccctaaa 30365127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 12 - 97
Target Start/End: Original strand, 12022267 - 12022352
Alignment:
Q  12 ataatacttcaaaaacactttatttattttnnnnnnncattttacgttgtttgtaatataaaaattaaaagtgaaccctcccctcc 97  Q
    |||||||||||||||||||| |||||||||       |||||||| ||||  ||||| |||||| ||||||||| |||||||||||    
T  12022267 ataatacttcaaaaacacttaatttattttaaaaaaacattttacattgtccgtaatttaaaaaataaaagtgagccctcccctcc 12022352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 12 - 119
Target Start/End: Original strand, 40633113 - 40633224
Alignment:
Q  12 ataatacttcaaaaacactttatttattttnnnnnnncattttacgttgtttgtaatataaaaattaaaagtgaacc----ctcccctcccttcttaaac 107  Q
    |||||| ||||||||||||| |||||||||       |||||||||||||| |||||  ||||||||||| ||||||    || || |||||||  ||||    
T  40633113 ataatatttcaaaaacacttaatttattttaaaacaacattttacgttgttcgtaattgaaaaattaaaattgaacctccgcttccttcccttccgaaac 40633212  T
Q  108 cctcaatccaaa 119  Q
    ||||||||||||    
T  40633213 cctcaatccaaa 40633224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 64 - 101
Target Start/End: Original strand, 2248628 - 2248665
Alignment:
Q  64 gtaatataaaaattaaaagtgaaccctcccctcccttc 101  Q
    ||||| ||||||| ||||||||||||||||||||||||    
T  2248628 gtaatttaaaaataaaaagtgaaccctcccctcccttc 2248665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 61 - 102
Target Start/End: Original strand, 11575579 - 11575620
Alignment:
Q  61 tttgtaatataaaaattaaaagtgaaccctcccctcccttct 102  Q
    |||||||| ||||||| |||||| ||||||||||||||||||    
T  11575579 tttgtaatttaaaaatgaaaagtaaaccctcccctcccttct 11575620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 64 - 130
Target Start/End: Original strand, 41676457 - 41676523
Alignment:
Q  64 gtaatataaaaattaaaagtgaaccctcccctcccttcttaaaccctcaatccaaatacatcctaaa 130  Q
    ||||| ||||||| |||||| |||||||||||| |||| ||||||||| ||||||| ||||||||||    
T  41676457 gtaatttaaaaatgaaaagtaaaccctcccctctcttcctaaaccctcgatccaaacacatcctaaa 41676523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 49 - 129
Target Start/End: Original strand, 525261 - 525346
Alignment:
Q  49 cattttacgttgtttgtaatataaaaattaaaagtgaa-----ccctcccctcccttcttaaaccctcaatccaaatacatcctaa 129  Q
    |||||||||||||||||||| |||||||||||||||||     || |||| |||| || ||||||||||||||||| ||| |||||    
T  525261 cattttacgttgtttgtaatttaaaaattaaaagtgaactcttccttcccttcccgtcctaaaccctcaatccaaacacaccctaa 525346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 49 - 98
Target Start/End: Complemental strand, 51303467 - 51303418
Alignment:
Q  49 cattttacgttgtttgtaatataaaaattaaaagtgaaccctcccctccc 98  Q
    |||||||| ||||| |||||||||||| ||||||||| ||||||||||||    
T  51303467 cattttacattgttggtaatataaaaaataaaagtgagccctcccctccc 51303418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 85
Target Start/End: Original strand, 1085614 - 1085687
Alignment:
Q  12 ataatacttcaaaaacactttatttattttnnnnnnncattttacgttgtttgtaatataaaaattaaaagtga 85  Q
    |||||||||||||||||||| |||||||||       |||||||| | ||| ||||| |||||| |||||||||    
T  1085614 ataatacttcaaaaacacttaatttattttaaaaaaacattttacatggttcgtaatttaaaaaataaaagtga 1085687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 65 - 129
Target Start/End: Complemental strand, 20607285 - 20607221
Alignment:
Q  65 taatataaaaattaaaagtgaaccctcccctcccttcttaaaccctcaatccaaatacatcctaa 129  Q
    |||| |||||| ||||||||| ||||||| |||| || |||||||||||| |||| ||| |||||    
T  20607285 taatttaaaaaataaaagtgagccctcccttcccctcctaaaccctcaattcaaacacaccctaa 20607221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 85
Target Start/End: Complemental strand, 33643388 - 33643315
Alignment:
Q  12 ataatacttcaaaaacactttatttattttnnnnnnncattttacgttgtttgtaatataaaaattaaaagtga 85  Q
    |||||||||||||||||||| |||||||||       |||||||| || || ||||| |||||| |||||||||    
T  33643388 ataatacttcaaaaacacttaatttattttaaaaaaacattttacatttttcgtaatttaaaaaataaaagtga 33643315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0119 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 12 - 100
Target Start/End: Complemental strand, 37503 - 37415
Alignment:
Q  12 ataatacttcaaaaacactttatttattttnnnnnnncattttacgttgtttgtaatataaaaattaaaagtgaaccctcccctccctt 100  Q
    |||| ||||||||||||||| |||||||||       |||||||| ||||| ||||| |||||| ||||||||| ||||||||| ||||    
T  37503 ataacacttcaaaaacacttgatttattttaaaaaaacattttacattgttcgtaatttaaaaaataaaagtgagccctccccttcctt 37415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0119; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 49 - 100
Target Start/End: Complemental strand, 30798 - 30747
Alignment:
Q  49 cattttacgttgtttgtaatataaaaattaaaagtgaaccctcccctccctt 100  Q
    |||||||| ||||| ||||| |||||| ||||||||| ||||||||||||||    
T  30798 cattttacattgttcgtaatttaaaaaataaaagtgagccctcccctccctt 30747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 12 - 101
Target Start/End: Complemental strand, 23091115 - 23091026
Alignment:
Q  12 ataatacttcaaaaacactttatttattttnnnnnnncattttacgttgtttgtaatataaaaattaaaagtgaaccctcccctcccttc 101  Q
    |||||||||||||||||||| ||||| |||       |||||||  ||||| ||||| |||||  ||||||||| |||||||||||||||    
T  23091115 ataatacttcaaaaacacttaatttagtttaaaaatacattttagattgttcgtaatttaaaagataaaagtgagccctcccctcccttc 23091026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 111
Target Start/End: Complemental strand, 26318425 - 26318327
Alignment:
Q  12 ataatacttcaaaaacactttatttattttnnnnnnncattttacgttgtttgtaatataaaaattaaaagtgaaccctcccctcccttcttaaaccctc 111  Q
    |||||||||||||||||||| |||||||||       |||||||  || || ||||| |||||| ||||| |||||||||| | |||||| |||||||||    
T  26318425 ataatacttcaaaaacacttaatttattttaaaaaaacattttatatttttcgtaatttaaaaaataaaaatgaaccctcctc-cccttcctaaaccctc 26318327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 97
Target Start/End: Original strand, 1559 - 1607
Alignment:
Q  49 cattttacgttgtttgtaatataaaaattaaaagtgaaccctcccctcc 97  Q
    |||||||| ||||| ||||| |||||| ||||||||| |||||||||||    
T  1559 cattttacattgttcgtaatttaaaaaataaaagtgagccctcccctcc 1607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 65 - 129
Target Start/End: Complemental strand, 184668 - 184609
Alignment:
Q  65 taatataaaaattaaaagtgaaccctcccctcccttcttaaaccctcaatccaaatacatcctaa 129  Q
    |||| |||||| |||||||||||||||||||||     ||||||||||||||||| ||| |||||    
T  184668 taatttaaaaaataaaagtgaaccctcccctcc-----taaaccctcaatccaaacacaccctaa 184609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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