View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1836_low_132 (Length: 211)
Name: NF1836_low_132
Description: NF1836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1836_low_132 |
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Alignment Details
Target: chr3 (Bit Score: 179; Significance: 9e-97; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 179; E-Value: 9e-97
Query Start/End: Original strand, 16 - 194
Target Start/End: Original strand, 30490305 - 30490483
Alignment:
| Q |
16 |
atgaagtagtaacctgccagagcatatattgcaatggtgatagtctctgcttaagaaatgtttatgcggaataatgtcttgaaagttgaatgcatcaacc |
115 |
Q |
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| T |
30490305 |
atgaagtagtaacctgccagagcatatattgcaatggtgatagtctctgcttaagaaatgtttatgcggaataatgtcttgaaagttgaatgcatcaacc |
30490404 |
T |
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| Q |
116 |
atcctacattgacctttttgtttacatttcttgatctttccctaatagaaatgtgtgatgctgtataagtgtgagttgt |
194 |
Q |
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| T |
30490405 |
atcctacattgacctttttgtttacatttcttgatctttccctaatagaaatgtgtgatgctgtataagtgtgagttgt |
30490483 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 16 - 194
Target Start/End: Original strand, 30521128 - 30521306
Alignment:
| Q |
16 |
atgaagtagtaacctgccagagcatatattgcaatggtgatagtctctgcttaagaaatgtttatgcggaataatgtcttgaaagttgaatgcatcaacc |
115 |
Q |
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| T |
30521128 |
atgaagtagtaacctgccagagcatatattgcaatggtgatagtctctgcttaagaaatgtttatgtggaataatgtcttgaaagttgaatgcatcaacc |
30521227 |
T |
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| Q |
116 |
atcctacattgacctttttgtttacatttcttgatctttccctaatagaaatgtgtgatgctgtataagtgtgagttgt |
194 |
Q |
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| T |
30521228 |
atcctaacttgacctttttgcttacatctgctgatctttccctaatagaaatgtgcgatgctgtataagtgtgagttgt |
30521306 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 87 - 149
Target Start/End: Original strand, 30519362 - 30519426
Alignment:
| Q |
87 |
taatgtcttgaaagttgaatgcatcaaccatc--ctacattgacctttttgtttacatttcttga |
149 |
Q |
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| T |
30519362 |
taatttcttgagagttgaatgcatccaccatctcctacctttacctttttgtttacatttgttga |
30519426 |
T |
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