View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1836_low_134 (Length: 209)

Name: NF1836_low_134
Description: NF1836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1836_low_134
NF1836_low_134
[»] chr8 (9 HSPs)
chr8 (1-155)||(26753846-26753997)
chr8 (1-61)||(33230987-33231048)
chr8 (1-60)||(1941993-1942053)
chr8 (1-60)||(3404514-3404574)
chr8 (1-60)||(27085429-27085489)
chr8 (1-60)||(29612072-29612132)
chr8 (1-60)||(34272596-34272656)
chr8 (1-60)||(34349796-34349856)
chr8 (1-60)||(36102830-36102890)
[»] chr7 (4 HSPs)
chr7 (1-60)||(23620734-23620793)
chr7 (1-60)||(5967993-5968053)
chr7 (1-60)||(41002191-41002251)
chr7 (1-60)||(43188938-43188998)
[»] chr1 (8 HSPs)
chr1 (1-61)||(28748270-28748331)
chr1 (1-61)||(36668589-36668650)
chr1 (1-60)||(1523676-1523736)
chr1 (1-60)||(13061337-13061397)
chr1 (1-60)||(23871403-23871463)
chr1 (1-60)||(27500065-27500125)
chr1 (1-60)||(32299183-32299243)
chr1 (1-60)||(32300136-32300196)
[»] chr4 (9 HSPs)
chr4 (1-60)||(49936583-49936643)
chr4 (1-60)||(3126952-3127012)
chr4 (1-60)||(7182131-7182191)
chr4 (1-60)||(17873277-17873337)
chr4 (1-60)||(31530100-31530160)
chr4 (1-60)||(32060727-32060787)
chr4 (1-60)||(37756663-37756723)
chr4 (1-60)||(41363752-41363812)
chr4 (1-60)||(47669891-47669951)
[»] chr2 (14 HSPs)
chr2 (7-60)||(18780465-18780519)
chr2 (1-45)||(4666231-4666276)
chr2 (1-60)||(3038887-3038947)
chr2 (1-60)||(3119792-3119852)
chr2 (1-60)||(4042045-4042105)
chr2 (1-60)||(8410870-8410930)
chr2 (1-60)||(8990903-8990963)
chr2 (1-60)||(9087405-9087465)
chr2 (1-60)||(13765879-13765939)
chr2 (1-60)||(13767499-13767559)
chr2 (1-60)||(18826166-18826226)
chr2 (1-60)||(36567218-36567278)
chr2 (1-60)||(38293969-38294029)
chr2 (1-60)||(44020420-44020480)
[»] chr3 (13 HSPs)
chr3 (7-60)||(34306679-34306732)
chr3 (1-60)||(2420740-2420800)
chr3 (1-60)||(19148248-19148308)
chr3 (1-60)||(25428749-25428809)
chr3 (1-60)||(38526234-38526294)
chr3 (1-60)||(39499279-39499339)
chr3 (1-60)||(41961917-41961977)
chr3 (1-60)||(43007462-43007522)
chr3 (1-60)||(47714613-47714673)
chr3 (1-60)||(47789386-47789446)
chr3 (1-60)||(49860917-49860977)
chr3 (1-45)||(54748408-54748452)
chr3 (1-60)||(55439665-55439725)
[»] scaffold0636 (1 HSPs)
scaffold0636 (1-60)||(8472-8532)
[»] scaffold0028 (1 HSPs)
scaffold0028 (1-60)||(35395-35455)
[»] chr6 (6 HSPs)
chr6 (1-60)||(5825413-5825473)
chr6 (1-45)||(17444038-17444082)
chr6 (1-60)||(23095068-23095128)
chr6 (1-60)||(24734961-24735021)
chr6 (1-60)||(26574335-26574395)
chr6 (1-60)||(34914708-34914768)
[»] chr5 (3 HSPs)
chr5 (1-60)||(1935047-1935107)
chr5 (1-60)||(4841649-4841709)
chr5 (1-60)||(26018822-26018882)


Alignment Details
Target: chr8 (Bit Score: 89; Significance: 4e-43; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 89; E-Value: 4e-43
Query Start/End: Original strand, 1 - 155
Target Start/End: Original strand, 26753846 - 26753997
Alignment:
Q  1 taatgcttatgattaatatattttaaatgtaataatattataacatcatacattgaatttagagagtaatatttagnnnnnnnnnccttcacattctttg 100  Q
    ||||| |||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||  |||||||||          |||||||||||||||    
T  26753846 taatggttattattaatatattttaaatgtaaaaatattataacatcatacattgaatttagag--taatattta-attttttttccttcacattctttg 26753942  T
Q  101 gggtaacatttatattcgtttagtcttttttaacaaggccacataccatagtcat 155  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||| ||||    
T  26753943 gggtaacatttatattcgtttagtcttttttaacaaggccacatgccataatcat 26753997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 33230987 - 33231048
Alignment:
Q  1 taatgcttatgattaatata-ttttaaatgtaataatattataacatcatacattgaattta 61  Q
    |||| ||||||||||||||| |||||| | ||| |||||||||||| |||| ||||||||||    
T  33230987 taatacttatgattaatatacttttaattttaagaatattataacaacatagattgaattta 33231048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 1941993 - 1942053
Alignment:
Q  1 taatgcttatgattaatata-ttttaaatgtaataatattataacatcatacattgaattt 60  Q
    |||| ||||||||||||||| |||||| | ||| |||||||||||| |||| |||||||||    
T  1941993 taatacttatgattaatatacttttaattttaagaatattataacaacatagattgaattt 1942053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 3404514 - 3404574
Alignment:
Q  1 taatgcttatgattaatata-ttttaaatgtaataatattataacatcatacattgaattt 60  Q
    |||| ||||||||||||||| |||||| | ||| |||||||||||| |||| |||||||||    
T  3404514 taatacttatgattaatatacttttaattttaagaatattataacaacatagattgaattt 3404574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 27085489 - 27085429
Alignment:
Q  1 taatgcttatgattaatatattttaaatgt-aataatattataacatcatacattgaattt 60  Q
    |||||||||||||||||||||||| ||| | || |||||||||||| |||| ||| |||||    
T  27085489 taatgcttatgattaatatatttttaatttaaaaaatattataacaacatatattaaattt 27085429  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 29612132 - 29612072
Alignment:
Q  1 taatgcttatgattaatatattttaaatgt-aataatattataacatcatacattgaattt 60  Q
    |||| ||||||||||||||||||| ||| | ||||||||||||||| |||| ||| |||||    
T  29612132 taatacttatgattaatatatttttaattttaataatattataacaacatagatttaattt 29612072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 34272656 - 34272596
Alignment:
Q  1 taatgcttatgattaatata-ttttaaatgtaataatattataacatcatacattgaattt 60  Q
    |||| ||||||||||||||| |||||| | ||| |||||||||||| |||| |||||||||    
T  34272656 taatacttatgattaatatacttttaattttaagaatattataacaacatagattgaattt 34272596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 34349856 - 34349796
Alignment:
Q  1 taatgcttatgattaatata-ttttaaatgtaataatattataacatcatacattgaattt 60  Q
    |||| ||||||||||||||| |||||| | ||| |||||||||||| |||| |||||||||    
T  34349856 taatacttatgattaatatacttttaattttaagaatattataacaacatatattgaattt 34349796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 36102830 - 36102890
Alignment:
Q  1 taatgcttatgattaatata-ttttaaatgtaataatattataacatcatacattgaattt 60  Q
    |||| ||||||||||||||| |||||| | ||| |||||||||||| |||| |||||||||    
T  36102830 taatacttatgattaatatacttttaattttaagaatattataacaacatagattgaattt 36102890  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 23620734 - 23620793
Alignment:
Q  1 taatgcttatgattaatatattttaaatgtaataatattataacatcatacattgaattt 60  Q
    |||| ||||||||||||||||||||| | ||| |||||||||||| |||| |||||||||    
T  23620734 taatacttatgattaatatattttaattttaagaatattataacaacatagattgaattt 23620793  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 5967993 - 5968053
Alignment:
Q  1 taatgcttatgattaatata-ttttaaatgtaataatattataacatcatacattgaattt 60  Q
    |||| ||||||||||||||| |||||| | ||| |||||||||||| |||| |||||||||    
T  5967993 taatacttatgattaatatacttttaattttaagaatattataacaacatagattgaattt 5968053  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 41002191 - 41002251
Alignment:
Q  1 taatgcttatgattaatata-ttttaaatgtaataatattataacatcatacattgaattt 60  Q
    |||| ||||||||||||||| |||||| | ||| |||||||||||| |||| |||||||||    
T  41002191 taatacttatgattaatatatttttaattttaagaatattataacaacatagattgaattt 41002251  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 43188998 - 43188938
Alignment:
Q  1 taatgcttatgattaatata-ttttaaatgtaataatattataacatcatacattgaattt 60  Q
    |||| ||||||||||||||| |||||| | ||| |||||||||||| |||| |||||||||    
T  43188998 taatacttatgattaatatacttttaattttaagaatattataacaacatagattgaattt 43188938  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 28748331 - 28748270
Alignment:
Q  1 taatgcttatgattaatatattttaaatgtaat-aatattataacatcatacattgaattta 61  Q
    |||| ||||||||||||||||||||||| | || |||||||||||| |||| ||||||||||    
T  28748331 taatacttatgattaatatattttaaattttatgaatattataacaacatagattgaattta 28748270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 36668589 - 36668650
Alignment:
Q  1 taatgcttatgattaatata-ttttaaatgtaataatattataacatcatacattgaattta 61  Q
    |||||||||||||||||||| |||||| | ||| ||||||||||||  ||| ||||||||||    
T  36668589 taatgcttatgattaatatatttttaattttaagaatattataacaatatagattgaattta 36668650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 1523736 - 1523676
Alignment:
Q  1 taatgcttatgattaatata-ttttaaatgtaataatattataacatcatacattgaattt 60  Q
    |||| ||||||||||||||| |||||| | ||| |||||||||||| |||| |||||||||    
T  1523736 taatacttatgattaatatacttttaattttaagaatattataacaacatagattgaattt 1523676  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 13061337 - 13061397
Alignment:
Q  1 taatgcttatgattaatata-ttttaaatgtaataatattataacatcatacattgaattt 60  Q
    |||| ||||||||||||||| |||||| | ||| |||||||||||| |||| |||||||||    
T  13061337 taatacttatgattaatatacttttaattttaagaatattataacaacatagattgaattt 13061397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 23871403 - 23871463
Alignment:
Q  1 taatgcttatgattaatata-ttttaaatgtaataatattataacatcatacattgaattt 60  Q
    |||| ||||||||||||||| |||||| | ||| |||||||||||| |||| |||||||||    
T  23871403 taatacttatgattaatatacttttaattttaagaatattataacaacatagattgaattt 23871463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 27500125 - 27500065
Alignment:
Q  1 taatgcttatgattaatata-ttttaaatgtaataatattataacatcatacattgaattt 60  Q
    |||| ||||||||||||||| |||||| | ||| |||||||||||| |||| |||||||||    
T  27500125 taatacttatgattaatatacttttaattttaagaatattataacaacatagattgaattt 27500065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 32299243 - 32299183
Alignment:
Q  1 taatgcttatgattaatata-ttttaaatgtaataatattataacatcatacattgaattt 60  Q
    |||| ||||||||||||||| |||||| | ||| |||||||||||| |||| |||||||||    
T  32299243 taatacttatgattaatatacttttaattttaagaatattataacaacatagattgaattt 32299183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 32300196 - 32300136
Alignment:
Q  1 taatgcttatgattaatata-ttttaaatgtaataatattataacatcatacattgaattt 60  Q
    |||| ||||||||||||||| |||||| | ||| |||||||||||| |||| |||||||||    
T  32300196 taatacttatgattaatatacttttaattttaagaatattataacaacatagattgaattt 32300136  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 49936643 - 49936583
Alignment:
Q  1 taatgcttatgattaatata-ttttaaatgtaataatattataacatcatacattgaattt 60  Q
    |||||||||||||||||||| |||||| | ||| |||||||||||| |||| |||||||||    
T  49936643 taatgcttatgattaatatatttttaattttaagaatattataacaacatagattgaattt 49936583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 3126952 - 3127012
Alignment:
Q  1 taatgcttatgattaatata-ttttaaatgtaataatattataacatcatacattgaattt 60  Q
    |||| ||||||||||||||| |||||| | ||| |||||||||||| |||| |||||||||    
T  3126952 taatacttatgattaatatacttttaattttaagaatattataacaacatagattgaattt 3127012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 7182131 - 7182191
Alignment:
Q  1 taatgcttatgattaatata-ttttaaatgtaataatattataacatcatacattgaattt 60  Q
    |||| ||||||||||||||| |||||| | ||| |||||||||||| |||| |||||||||    
T  7182131 taatacttatgattaatatacttttaattttaagaatattataacaacatagattgaattt 7182191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 17873337 - 17873277
Alignment:
Q  1 taatgcttatgattaatata-ttttaaatgtaataatattataacatcatacattgaattt 60  Q
    |||| ||||||||||||||| |||||| | ||| |||||||||||| |||| |||||||||    
T  17873337 taatacttatgattaatatacttttaattttaagaatattataacaacataaattgaattt 17873277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 31530160 - 31530100
Alignment:
Q  1 taatgcttatgattaatata-ttttaaatgtaataatattataacatcatacattgaattt 60  Q
    |||| ||||||||||||||| |||||| | ||| |||||||||||| |||| |||||||||    
T  31530160 taatacttatgattaatatacttttaattttaagaatattataacaacatagattgaattt 31530100  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 32060787 - 32060727
Alignment:
Q  1 taatgcttatgattaatata-ttttaaatgtaataatattataacatcatacattgaattt 60  Q
    |||| ||||||||||||||| |||||| | ||| |||||||||||| |||| |||||||||    
T  32060787 taatacttatgattaatatacttttaattttaagaatattataacaacatagattgaattt 32060727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 37756663 - 37756723
Alignment:
Q  1 taatgcttatgattaatata-ttttaaatgtaataatattataacatcatacattgaattt 60  Q
    |||| ||||||||||||||| |||||| | ||| |||||||||||| |||| |||||||||    
T  37756663 taatacttatgattaatatacttttaattttaagaatattataacaacatagattgaattt 37756723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 41363752 - 41363812
Alignment:
Q  1 taatgcttatgattaatata-ttttaaatgtaataatattataacatcatacattgaattt 60  Q
    |||| ||||||||||||||| |||||| | ||| |||||||||||| |||| |||||||||    
T  41363752 taatacttatgattaatatacttttaattttaagaatattataacaacatagattgaattt 41363812  T

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Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 47669951 - 47669891
Alignment:
Q  1 taatgcttatgattaatata-ttttaaatgtaataatattataacatcatacattgaattt 60  Q
    |||| ||||||||||||||| |||||| | ||| |||||||||||| |||| |||||||||    
T  47669951 taatacttatgattaatatacttttaattttaagaatattataacaacatagattgaattt 47669891  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 60
Target Start/End: Complemental strand, 18780519 - 18780465
Alignment:
Q  7 ttatgattaatata-ttttaaatgtaataatattataacatcatacattgaattt 60  Q
    |||||||||||||| |||||| | |||||||||||||||| |||| |||||||||    
T  18780519 ttatgattaatatacttttaattttaataatattataacaacatagattgaattt 18780465  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 4666276 - 4666231
Alignment:
Q  1 taatgcttatgattaatatattttaaa-tgtaataatattataaca 45  Q
    ||||||||||||||||||||||||||| | ||| ||||||||||||    
T  4666276 taatgcttatgattaatatattttaaattttaagaatattataaca 4666231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 3038887 - 3038947
Alignment:
Q  1 taatgcttatgattaatata-ttttaaatgtaataatattataacatcatacattgaattt 60  Q
    |||| ||||||||||||||| |||||| | ||| |||||||||||| |||| |||||||||    
T  3038887 taatacttatgattaatatacttttaattttaagaatattataacaacatagattgaattt 3038947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 3119792 - 3119852
Alignment:
Q  1 taatgcttatgattaatata-ttttaaatgtaataatattataacatcatacattgaattt 60  Q
    |||| ||||||||||||||| |||||| | ||| |||||||||||| |||| |||||||||    
T  3119792 taatacttatgattaatatacttttaattttaagaatattataacaacatagattgaattt 3119852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 4042105 - 4042045
Alignment:
Q  1 taatgcttatgattaatata-ttttaaatgtaataatattataacatcatacattgaattt 60  Q
    |||| ||||||||||||||| |||||| | ||| |||||||||||| |||| |||||||||    
T  4042105 taatacttatgattaatatacttttaattttaagaatattataacaacatagattgaattt 4042045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 8410870 - 8410930
Alignment:
Q  1 taatgcttatgattaatata-ttttaaatgtaataatattataacatcatacattgaattt 60  Q
    |||| ||||||||||||||| |||||| | ||| |||||||||||| |||| |||||||||    
T  8410870 taatacttatgattaatatacttttaattttaagaatattataacaacatagattgaattt 8410930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 8990903 - 8990963
Alignment:
Q  1 taatgcttatgattaatata-ttttaaatgtaataatattataacatcatacattgaattt 60  Q
    |||| ||||||||||||||| |||||| | ||| |||||||||||| |||| |||||||||    
T  8990903 taatacttatgattaatatacttttaattttaagaatattataacaacatagattgaattt 8990963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 9087405 - 9087465
Alignment:
Q  1 taatgcttatgattaatata-ttttaaatgtaataatattataacatcatacattgaattt 60  Q
    |||||||||||||||||||| |||||| | |||||||||||| ||| |||| ||| |||||    
T  9087405 taatgcttatgattaatatatttttaattttaataatattatgacaacatatattaaattt 9087465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 13765879 - 13765939
Alignment:
Q  1 taatgcttatgattaatata-ttttaaatgtaataatattataacatcatacattgaattt 60  Q
    |||| ||||||||||||||| |||||| | ||| |||||||||||| |||| |||||||||    
T  13765879 taatacttatgattaatatacttttaattttaagaatattataacaacatagattgaattt 13765939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 13767559 - 13767499
Alignment:
Q  1 taatgcttatgattaatatattttaaatgt-aataatattataacatcatacattgaattt 60  Q
    ||||| |||||||||||||||||| ||| | || |||||||||||| |||| |||||||||    
T  13767559 taatgtttatgattaatatatttttaattttaaaaatattataacaacatagattgaattt 13767499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 18826166 - 18826226
Alignment:
Q  1 taatgcttatgattaatata-ttttaaatgtaataatattataacatcatacattgaattt 60  Q
    |||| ||||||||||||||| |||||| | ||| |||||||||||| |||| |||||||||    
T  18826166 taatacttatgattaatatacttttaattttaagaatattataacaacataaattgaattt 18826226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 36567218 - 36567278
Alignment:
Q  1 taatgcttatgattaatata-ttttaaatgtaataatattataacatcatacattgaattt 60  Q
    |||| ||||||||||||||| |||||| | ||| |||||||||||| |||| |||||||||    
T  36567218 taatacttatgattaatatacttttaattttaagaatattataacaacatagattgaattt 36567278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 38294029 - 38293969
Alignment:
Q  1 taatgcttatgattaatata-ttttaaatgtaataatattataacatcatacattgaattt 60  Q
    |||| ||||||||||||||| |||||| | ||| |||||||||||| |||| |||||||||    
T  38294029 taatacttatgattaatatacttttaattttaagaatattataacaacatagattgaattt 38293969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 44020480 - 44020420
Alignment:
Q  1 taatgcttatgattaatata-ttttaaatgtaataatattataacatcatacattgaattt 60  Q
    |||| ||||||||||||||| |||||| | ||| |||||||||||| |||| |||||||||    
T  44020480 taatacttatgattaatatacttttaattttaagaatattataacaacatagattgaattt 44020420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.00000007; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 7 - 60
Target Start/End: Complemental strand, 34306732 - 34306679
Alignment:
Q  7 ttatgattaatatattttaaatgtaataatattataacatcatacattgaattt 60  Q
    |||||||||||||| ||||| | ||| |||||||||||| |||| |||||||||    
T  34306732 ttatgattaatatactttaattttaagaatattataacaacatagattgaattt 34306679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 2420800 - 2420740
Alignment:
Q  1 taatgcttatgattaatata-ttttaaatgtaataatattataacatcatacattgaattt 60  Q
    |||| ||||||||||||||| |||||| | ||| |||||||||||| |||| |||||||||    
T  2420800 taatacttatgattaatatacttttaattttaagaatattataacaacatagattgaattt 2420740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 19148308 - 19148248
Alignment:
Q  1 taatgcttatgattaatata-ttttaaatgtaataatattataacatcatacattgaattt 60  Q
    |||||||||||||||||||| |||||| | ||| |||||||||||| |||| ||| |||||    
T  19148308 taatgcttatgattaatatatttttaattttaagaatattataacaacataaattaaattt 19148248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 25428809 - 25428749
Alignment:
Q  1 taatgcttatgattaatata-ttttaaatgtaataatattataacatcatacattgaattt 60  Q
    |||| ||||||||||||||| |||||| | ||| |||||||||||| |||| |||||||||    
T  25428809 taatacttatgattaatatacttttaattttaagaatattataacaacatagattgaattt 25428749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 38526294 - 38526234
Alignment:
Q  1 taatgcttatgattaatata-ttttaaatgtaataatattataacatcatacattgaattt 60  Q
    |||| ||||||||||||||| |||||| | ||| |||||||||||| |||| |||||||||    
T  38526294 taatacttatgattaatatacttttaattttaagaatattataacaacatatattgaattt 38526234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 39499339 - 39499279
Alignment:
Q  1 taatgcttatgattaatata-ttttaaatgtaataatattataacatcatacattgaattt 60  Q
    |||| ||||||||||||||| |||||| | ||| |||||||||||| |||| |||||||||    
T  39499339 taatacttatgattaatatacttttaattttaagaatattataacaacatagattgaattt 39499279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 41961917 - 41961977
Alignment:
Q  1 taatgcttatgattaatata-ttttaaatgtaataatattataacatcatacattgaattt 60  Q
    |||| ||||||||||||||| |||||| | ||| |||||||||||| |||| |||||||||    
T  41961917 taatacttatgattaatatacttttaattttaagaatattataacaacatagattgaattt 41961977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 43007462 - 43007522
Alignment:
Q  1 taatgcttatgattaatata-ttttaaatgtaataatattataacatcatacattgaattt 60  Q
    |||| ||||||||||||||| |||||| | ||| |||||||||||| |||| |||||||||    
T  43007462 taatacttatgattaatatacttttaattttaagaatattataacaacatagattgaattt 43007522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 47714613 - 47714673
Alignment:
Q  1 taatgcttatgattaatata-ttttaaatgtaataatattataacatcatacattgaattt 60  Q
    |||| ||||||||||||||| |||||| | ||| |||||||||||| |||| |||||||||    
T  47714613 taatacttatgattaatatacttttaattttaagaatattataacaacatagattgaattt 47714673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 47789386 - 47789446
Alignment:
Q  1 taatgcttatgattaatata-ttttaaatgtaataatattataacatcatacattgaattt 60  Q
    |||| ||||||||||||||| |||||| | ||| |||||||||||| |||| |||||||||    
T  47789386 taatacttatgattaatatacttttaattttaagaatattataacaacatagattgaattt 47789446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 49860977 - 49860917
Alignment:
Q  1 taatgcttatgattaatata-ttttaaatgtaataatattataacatcatacattgaattt 60  Q
    |||| ||||||||||||||| |||||| | ||| |||||||||||| |||| |||||||||    
T  49860977 taatacttatgattaatatacttttaattttaagaatattataacaacatagattgaattt 49860917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 54748452 - 54748408
Alignment:
Q  1 taatgcttatgattaatatattttaaatgtaataatattataaca 45  Q
    |||||||||||||||||||||||| ||| | | ||||||||||||    
T  54748452 taatgcttatgattaatatatttttaattttaaaatattataaca 54748408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 55439725 - 55439665
Alignment:
Q  1 taatgcttatgattaatata-ttttaaatgtaataatattataacatcatacattgaattt 60  Q
    |||| ||||||||||||||| |||||| | ||| |||||||||||| |||| |||||||||    
T  55439725 taatacttatgattaatatacttttaattttaagaatattataacaacatagattgaattt 55439665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0636 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0636
Description:

Target: scaffold0636; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 8532 - 8472
Alignment:
Q  1 taatgcttatgattaatata-ttttaaatgtaataatattataacatcatacattgaattt 60  Q
    |||| ||||||||||||||| |||||| | ||| |||||||||||| |||| |||||||||    
T  8532 taatacttatgattaatatacttttaattttaagaatattataacaacatagattgaattt 8472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 35395 - 35455
Alignment:
Q  1 taatgcttatgattaatata-ttttaaatgtaataatattataacatcatacattgaattt 60  Q
    |||| ||||||||||||||| |||||| | ||| |||||||||||| |||| |||||||||    
T  35395 taatacttatgattaatatacttttaattttaagaatattataacaacatagattgaattt 35455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 5825473 - 5825413
Alignment:
Q  1 taatgcttatgattaatata-ttttaaatgtaataatattataacatcatacattgaattt 60  Q
    |||| ||||||||||||||| |||||| | ||| |||||||||||| |||| |||||||||    
T  5825473 taatacttatgattaatatacttttaattttaagaatattataacaacatagattgaattt 5825413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 17444082 - 17444038
Alignment:
Q  1 taatgcttatgattaatatattttaaatgtaataatattataaca 45  Q
    |||| ||||||||||||||||||||| | ||| ||||||||||||    
T  17444082 taatacttatgattaatatattttaattttaagaatattataaca 17444038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 23095068 - 23095128
Alignment:
Q  1 taatgcttatgattaatata-ttttaaatgtaataatattataacatcatacattgaattt 60  Q
    |||| ||||||||||||||| |||||| | ||| |||||||||||| |||| |||||||||    
T  23095068 taatacttatgattaatatacttttaattttaagaatattataacaacatagattgaattt 23095128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 24735021 - 24734961
Alignment:
Q  1 taatgcttatgattaatata-ttttaaatgtaataatattataacatcatacattgaattt 60  Q
    |||| ||||||||||||||| |||||| | ||| |||||||||||| |||| |||||||||    
T  24735021 taatacttatgattaatatacttttaattttaagaatattataacaacatagattgaattt 24734961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 26574335 - 26574395
Alignment:
Q  1 taatgcttatgattaatata-ttttaaatgtaataatattataacatcatacattgaattt 60  Q
    |||| ||||||||||||||| |||||| | ||| |||||||||||| |||| |||||||||    
T  26574335 taatacttatgattaatatacttttaattttaagaatattataacaacatagattgaattt 26574395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 34914768 - 34914708
Alignment:
Q  1 taatgcttatgattaatata-ttttaaatgtaataatattataacatcatacattgaattt 60  Q
    |||| ||||||||||||||| |||||| | ||| |||||||||||| |||| |||||||||    
T  34914768 taatacttatgattaatatacttttaattttaagaatattataacaacataaattgaattt 34914708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 1935047 - 1935107
Alignment:
Q  1 taatgcttatgattaatata-ttttaaatgtaataatattataacatcatacattgaattt 60  Q
    |||||||||||||||||||| |||||| | ||| |||||||||||| |||| ||| |||||    
T  1935047 taatgcttatgattaatatatttttaattttaagaatattataacaacatatattaaattt 1935107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 4841649 - 4841709
Alignment:
Q  1 taatgcttatgattaatata-ttttaaatgtaataatattataacatcatacattgaattt 60  Q
    |||||||||||||||||||| |||||| | ||| |||||||||||| |||| ||| |||||    
T  4841649 taatgcttatgattaatatatttttaattttaagaatattataacaacatatattcaattt 4841709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 26018882 - 26018822
Alignment:
Q  1 taatgcttatgattaatata-ttttaaatgtaataatattataacatcatacattgaattt 60  Q
    |||||||||||||||||||| |||||| | ||| |||||||||||| |||| ||| |||||    
T  26018882 taatgcttatgattaatatatttttaattttaagaatattataacaacatatattaaattt 26018822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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