View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1836_low_14 (Length: 578)
Name: NF1836_low_14
Description: NF1836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1836_low_14 |
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Alignment Details
Target: chr5 (Bit Score: 322; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 168 - 569
Target Start/End: Original strand, 3854900 - 3855294
Alignment:
| Q |
168 |
gttgttgttaatatgataaagttaacaaaccttatgaattacaatactttgaagagaggggcaggcgcggatgaacttcttcaaccaatcccaacgataa |
267 |
Q |
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| T |
3854900 |
gttgttgctaatatgataaagttaacaaaccttatgaattacaatactttgaagagaggggcaggcgcggatgaacttcttcaaccaatcccaacgacaa |
3854999 |
T |
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| Q |
268 |
tgataataatattcctcatcctcttttctcaaagctaagctccacacgagttaaattgaaaaactgagttgtctgtactggcgtgacatagttaaacaat |
367 |
Q |
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| T |
3855000 |
t------aatattcctcatcctcttt-ctcaaagctaagctccacatgagttaaattgaaaaactgagttgtctgtactggcgcgacatagttaaacaat |
3855092 |
T |
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| Q |
368 |
ttcaagggtgtttgtaccgctacttgtgcgcgtagaaactccacattgtaaaacaatttcaagggnnnnnnntaagaaatagaagaagagtcagaaatgt |
467 |
Q |
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| T |
3855093 |
ttcaagggttttcgtaccgctacttgtgcgcgtagaaactccacattgtaaaacaatttcaagggaaaaaaataagaaatagaagaagagtcagaaatgt |
3855192 |
T |
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| Q |
468 |
gggatttgagcaaattggggaagggttctaataactcgtctgtttgtttagcaagagcatcaagagtatcattatcatcatgggtgctgacatttttgat |
567 |
Q |
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| T |
3855193 |
gggatttgagcaaattggggaagggttctaataactcgtctgtttgtttagcaagagcatcaagagtatcattatcatcatgggtgctgacattttttat |
3855292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 11 - 89
Target Start/End: Original strand, 3854755 - 3854833
Alignment:
| Q |
11 |
caaaggcattgcagttgggaacaaattgtggatgcaatgaattatgatcatcaacgcttaatccatagcctcctcctcc |
89 |
Q |
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| T |
3854755 |
caaagacattgcagttggggacaaattgtggatgcaatgaattatgatcatcaacgcttgatccatagcctcctcctcc |
3854833 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 176 - 569
Target Start/End: Complemental strand, 4141730 - 4141329
Alignment:
| Q |
176 |
taatatgataaagttaacaaaccttatgaattacaatactttgaagagaggggcaggcgcggatgaacttcttcaaccaatcccaacgataatgataata |
275 |
Q |
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| T |
4141730 |
taatatgatagagttaacaaaccttatgaatcacaatactttgaagagaggggcaggcgcggatgaatttcttcaaccaatcccaatgataat------- |
4141638 |
T |
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| Q |
276 |
atattcctcatcctcttttctcaaagctaagctccacacgagttaaattgaaaaactgagt------------------tgtctgtactggcgtgacata |
357 |
Q |
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| T |
4141637 |
--attcctcatcctcctt-ctcaaagctaagctccatatgagttaaattgaaaaactgagtagtgtcttgttgttcagatgtttgtactggtgcgacata |
4141541 |
T |
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| Q |
358 |
gttaaacaatttcaagggtgtttgtaccgctacttgtgcgcgtagaaactccacattgtaaaacaatttcaagggnnnnnnntaagaaatagaagaagag |
457 |
Q |
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| T |
4141540 |
gtcaaacaatttcaagggtgtttgtaccgcgacttgtgcgcgtagaaactccacattgtaaaacaatttcaagggcaaaaaagacgaaatagaagaagag |
4141441 |
T |
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| Q |
458 |
tcagaaatgtgggatttgagcaaattggggaagggttctaataactcgtctgtttgtttagcaagagcatcaagagtatcattatcatcatgggtgctga |
557 |
Q |
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| T |
4141440 |
tcggaaatgtgggctttgagcaatttggggaagggttttaacaacttgtctctttgtttagtaagagcatcaagagtatcattatcatcattggtggtga |
4141341 |
T |
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| Q |
558 |
catttttgatga |
569 |
Q |
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| T |
4141340 |
cattttttatga |
4141329 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 11 - 94
Target Start/End: Complemental strand, 4141902 - 4141819
Alignment:
| Q |
11 |
caaaggcattgcagttgggaacaaattgtggatgcaatgaattatgatcatcaacgcttaatccatagcctcctcctcctccga |
94 |
Q |
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| T |
4141902 |
caaaggcattgcagttggggacaaattgtggatgcaatgaattatgatcatcgccgcttaatccataacctactcctcctccga |
4141819 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 449 - 494
Target Start/End: Complemental strand, 41541991 - 41541946
Alignment:
| Q |
449 |
gaagaagagtcagaaatgtgggatttgagcaaattggggaagggtt |
494 |
Q |
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| T |
41541991 |
gaagaagagtcagaaatgtgggctttgagcaaattggggaagggtt |
41541946 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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