View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1836_low_17 (Length: 552)
Name: NF1836_low_17
Description: NF1836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1836_low_17 |
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Alignment Details
Target: chr5 (Bit Score: 448; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 448; E-Value: 0
Query Start/End: Original strand, 11 - 535
Target Start/End: Original strand, 4761024 - 4761546
Alignment:
| Q |
11 |
cacagacacaacctctccaagatggtcctgcaaccaacaagtgcaattaattaaacagtttcagccttcacctaagttgtaaattgtaatgattatgtta |
110 |
Q |
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| T |
4761024 |
cacaaacacaacctctccaagatggtcctgcaaccaacaagtgcaattaattaaacagtttcagccttcacctaagttgtaaattgtaatgattatgtta |
4761123 |
T |
|
| Q |
111 |
gtatattagttttatgttagtagtttctctttcgtcagggtttgaatctcgatcattttcctactttaacccttagctcaattcagtcaagttatgtagt |
210 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4761124 |
gtatattagctttatgttagtagtttctctttcgtcagggtttgaatctcgatcattttcctactttaacccttagctcaattcagtcaagttatgtagt |
4761223 |
T |
|
| Q |
211 |
tcagttctaagttgcagtagttaaagtctaattcaatttacatgcataaacatactagagacccatacacgaacatattatagagaattatttttatagc |
310 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
4761224 |
tcagttataagttgcagtagttaaagtctaattcaatttacatgcatacacatactagagacccatacacgaacatattatagagaattatttttataac |
4761323 |
T |
|
| Q |
311 |
tgactatctgacctaacaaccgactaatctgagtggtattataataccactgtccacttgt-ggggcctcatttaaaatcagagcgttctgcatggacat |
409 |
Q |
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| | |||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||| ||||||| ||||||||||||| |
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| T |
4761324 |
ttagtatctgacctaacaaccgactaatctgagtgg---tataataccactgtccacttgtgggggcctcatttaaaaccagagcgctctgcatggacat |
4761420 |
T |
|
| Q |
410 |
attatggagaatgttaaggagaaaaggtgccgttaactaacctgagcatggtcagtgataccaatagtggctactgagccttcatgcttcacccattcat |
509 |
Q |
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|||| |||||||||||||||| | |||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4761421 |
attacggagaatgttaaggaggagaggtgcagtaaactaacctgagcatggtcagtgataccaatagtggctactgagccttcatgcttcacccattcat |
4761520 |
T |
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| Q |
510 |
gtgaagatgcatacttgagtccatcc |
535 |
Q |
| |
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|||||||||||||||||||||||||| |
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| T |
4761521 |
gtgaagatgcatacttgagtccatcc |
4761546 |
T |
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