View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1836_low_19 (Length: 525)
Name: NF1836_low_19
Description: NF1836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1836_low_19 |
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Alignment Details
Target: chr5 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 90 - 324
Target Start/End: Original strand, 12514832 - 12515066
Alignment:
| Q |
90 |
agtcaaatggaatctaaagaaggtgatgagagnnnnnnngaacacaaagtttctatgttaaagctattttcttttgctgactcttatgattatgtcttaa |
189 |
Q |
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| T |
12514832 |
agtcaaatggaatccaaagaaggtgatgagagaaaaaaagaacacaaagtttctatgttaaagctattttcttttgctgactcttatgattatgtcttaa |
12514931 |
T |
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| Q |
190 |
tgtttattggatctattggagccattgttcatggtgcttctgttcctattttctttattttctttggaaagttgatcaatgttattggcttggcttatct |
289 |
Q |
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| T |
12514932 |
tgtttattggatctattggagccattgttcatggtgcttctgttcctattttctttattttctttggaaagttgatcaatgttattggcttggcttatct |
12515031 |
T |
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| Q |
290 |
tttccctaaggaagcctctcacaaagttgccaagg |
324 |
Q |
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| T |
12515032 |
tttccctaaggaagcctctcacaaagttgccaagg |
12515066 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 398 - 490
Target Start/End: Original strand, 12515140 - 12515232
Alignment:
| Q |
398 |
gatggtctgtaatacagagttcagtcgatagtctgatcaagaattgttccattcaaaattgtttcgatttaatggaactaacaaaaatacaat |
490 |
Q |
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| T |
12515140 |
gatggtctttaatacagagttcagtcgatagtctgatcaaaaattgttccattcagaattgtttcgatttaatggaactaacaaaaatacaat |
12515232 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 217 - 324
Target Start/End: Original strand, 27718051 - 27718158
Alignment:
| Q |
217 |
ttcatggtgcttctgttcctattttctttattttctttggaaagttgatcaatgttattggcttggcttatcttttccctaaggaagcctctcacaaagt |
316 |
Q |
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| T |
27718051 |
ttcatggtgcatctgttcctgttttctttatcttctttgggaaaattattaatgtcgtaggtttggcttacctttttcctaaagaagcttcccaccaagt |
27718150 |
T |
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| Q |
317 |
tgccaagg |
324 |
Q |
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| T |
27718151 |
tgccaagg |
27718158 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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