View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1836_low_20 (Length: 525)
Name: NF1836_low_20
Description: NF1836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1836_low_20 |
 | |
|
| [»] chr7 (3 HSPs) |
| |
|
| [»] scaffold0057 (3 HSPs) |
| | |
|
Alignment Details
Target: chr7 (Bit Score: 430; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 430; E-Value: 0
Query Start/End: Original strand, 1 - 525
Target Start/End: Complemental strand, 39362947 - 39362441
Alignment:
| Q |
1 |
tccactcaaaaaggttacatatgttatcatccactatctaataagtattttgtctgttgagatgtcaccttccatgaacaagaaagttactttgttcaaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39362947 |
tccactcaaaaaggttacatatgttatcatccaccatctcataagtattttgtctgttgagatgtcaccttccatgaacaagaaagttactttgttcaaa |
39362848 |
T |
|
| Q |
101 |
ctcatcttctgggggagactataagtaaggaaatgagtttcttctacttcccgaccttactttcaggccaaaattgaggctgaaactagaggtaacaatg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39362847 |
ctcatcttctgggggagactataagtaaggaaatgagtttcttctacttcccgaccttactttcaggccaaaattgaggctgaaactagaggtaacaatg |
39362748 |
T |
|
| Q |
201 |
ttgagaccaaagttgattatgaaaaagatggaaatgttgaagttgatgtaagatatgaaaagaatttggtatatactagaaaaaagatcattcctgaatc |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
39362747 |
ttgagaccaaagttgattatgaaaaagatggaaatgttgaagttgatgtaagatatgaaaagaatttggtatatactagaaaaaagttcattcctgaatc |
39362648 |
T |
|
| Q |
301 |
taatcatatccaagataccataattagtggaggatcaactctttgtctagtgagtcaatcacggggcagcaagccggtcactctgtgatccgacattaca |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
39362647 |
taatcatatccaagataccataattagtggaggatcgactctttgtccagtgagtcaatcacggggcagcaagccggtcactctgcgatccgacattaca |
39362548 |
T |
|
| Q |
401 |
cgatgtaacttcacttgaccctataaactctagtgattcaatttctaaattttctcatccacatgaaccagaatgtaactcattgttacataaggaacca |
500 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||| || ||||||||||||||||||||||| |
|
|
| T |
39362547 |
cgatgtaacttcacttgaccctataaattctagtgattcaatttctaaattttct------------------agtgactcattgttacataaggaacca |
39362466 |
T |
|
| Q |
501 |
gaatccagcctaataaagcataaga |
525 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
39362465 |
gaatccagcctaataaagcataaga |
39362441 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 386 - 463
Target Start/End: Original strand, 3007321 - 3007398
Alignment:
| Q |
386 |
tgatccgacattacacgatgtaacttcacttgaccctataaactctagtgattcaatttctaaattttctcatccaca |
463 |
Q |
| |
|
||||||||||||||| || |||||| |||||||||| ||| ||| |||||| ||||||| ||||||||||| |||| |
|
|
| T |
3007321 |
tgatccgacattacatgagctaactttacttgacccttcaaattcttgtgatttaatttctgaattttctcatgcaca |
3007398 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 489 - 525
Target Start/End: Complemental strand, 39362447 - 39362411
Alignment:
| Q |
489 |
cataaggaaccagaatccagcctaataaagcataaga |
525 |
Q |
| |
|
|||||| ||||| |||||||||||||||||||||||| |
|
|
| T |
39362447 |
cataagaaaccaaaatccagcctaataaagcataaga |
39362411 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 100; Significance: 3e-49; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 1 - 257
Target Start/End: Original strand, 50059093 - 50059354
Alignment:
| Q |
1 |
tccactcaaaaaggttacatatgttatcatccactatctaataagtattttgtctgttgagatgtcaccttccatgaacaagaaagttactttgttcaaa |
100 |
Q |
| |
|
||||||||||| ||||||| |||||||||||| | |||| |||||| ||||| | | ||||||||||||| ||||||||||||||||| ||| |||||| |
|
|
| T |
50059093 |
tccactcaaaagggttacagatgttatcatcctcaatctcgtaagtactttgtttctcgagatgtcacctttcatgaacaagaaagttatttttttcaaa |
50059192 |
T |
|
| Q |
101 |
ctcatcttctggggg---agactataagtaaggaa-atgagtttcttctacttcccgaccttactttcaggcca-aaattgaggctgaaactagaggtaa |
195 |
Q |
| |
|
||||||||| ||||| ||| ||||||||||||| |||||| |||| ||||||| |||||||||||| | ||| || ||||| |||||||| ||||||| |
|
|
| T |
50059193 |
ctcatcttcagggggagaagaatataagtaaggaagatgagtctcttatacttcctgaccttactttcggaccagaagttgagtctgaaactggaggtaa |
50059292 |
T |
|
| Q |
196 |
caatgttgagaccaaagttgattatgaaaaagatggaaatgttgaagttgatgtaagatatg |
257 |
Q |
| |
|
|||||||| | ||||||||| |||||| ||| ||||||||||| |||||||||||||| |
|
|
| T |
50059293 |
tgatgttgagtctgaagttgattctgaaaatcatgtaaatgttgaagctgatgtaagatatg |
50059354 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 1 - 257
Target Start/End: Complemental strand, 28094324 - 28094066
Alignment:
| Q |
1 |
tccactcaaaaaggttacatatgttatcatccactatctaataagtattttgtctgttgagatgtcaccttccatgaacaagaaagttactttgttcaaa |
100 |
Q |
| |
|
||||||||||| ||||||| |||||||||||| | |||| |||||| ||||| | | |||||||||| |||||||||||||||||||| |||| ||||| |
|
|
| T |
28094324 |
tccactcaaaagggttacagatgttatcatcctccatctcgtaagtactttgtttctcgagatgtcactttccatgaacaagaaagttattttggtcaaa |
28094225 |
T |
|
| Q |
101 |
ct----catcttctgggggagactataagtaaggaaatgagtttcttctacttcccgaccttactttcaggcca-aaattgaggctgaaactagaggtaa |
195 |
Q |
| |
|
| ||||||| ||||| | |||||| ||| |||| | ||||||||||| |||||||||||| ||||| ||||||||| ||||||| ||||| | |
|
|
| T |
28094224 |
attgatcatcttcagggggtaaatataaggaag---atgaatctcttctacttcttgaccttactttcgggccagaaattgaggttgaaactggaggtga |
28094128 |
T |
|
| Q |
196 |
caatgttgagaccaaagttgattatgaaaaagatggaaatgttgaagttgatgtaagatatg |
257 |
Q |
| |
|
|||||||||||| | ||||||| |||||| ||| ||||||||||| |||| ||||||||| |
|
|
| T |
28094127 |
caatgttgagacggatgttgattctgaaaatcatgtaaatgttgaagctgatataagatatg |
28094066 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 386 - 518
Target Start/End: Original strand, 50059419 - 50059551
Alignment:
| Q |
386 |
tgatccgacattacacgatgtaacttcacttgaccctataaactctagtgattcaatttctaaattttctcatccacatgaaccagaatgtaactcattg |
485 |
Q |
| |
|
||||||||||||||| || ||||||| ||||||||| ||| ||| |||||||||||||| ||||||||||| ||||||||||||||| |||||||| |
|
|
| T |
50059419 |
tgatccgacattacatgaggtaactttgcttgacccttcaaattcttgtgattcaatttctgaattttctcatgcacatgaaccagaatctaactcatca |
50059518 |
T |
|
| Q |
486 |
ttacataaggaaccagaatccagcctaataaag |
518 |
Q |
| |
|
| |||||||||||||||| |||||| ||||||| |
|
|
| T |
50059519 |
tcacataaggaaccagaaaccagcccaataaag |
50059551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 66; Significance: 6e-29; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 49 - 315
Target Start/End: Original strand, 2413023 - 2413294
Alignment:
| Q |
49 |
tttgtctgttgagatgtcaccttccatgaacaagaaagttactttgttcaaactcatcttctgggggagactataagtaaggaa-atgagtttcttctac |
147 |
Q |
| |
|
||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| || | | |||||||| || ||| |||| ||| |
|
|
| T |
2413023 |
tttgtctctcgagatgtcaccttccatgaacaagaaagttactttgttcaaactcatcttcaggggtagtattcatgtaaggaagataagtctcttttac |
2413122 |
T |
|
| Q |
148 |
ttcccgaccttactttcaggcca-aaattgaggctgaaactagaggtaacaatgttgagaccaaagttgattatgaaaaagatggaaatgttgaagttga |
246 |
Q |
| |
|
||| ||||||| | | | ||| || |||||| ||||||| || || ||||||||||||| ||||||||| |||||| ||| |||||||||| || |
|
|
| T |
2413123 |
ttcatgaccttaatctaggaccagaagttgaggttgaaactggaagtgacaatgttgagacggaagttgattttgaaaatcatgttaatgttgaagccga |
2413222 |
T |
|
| Q |
247 |
tgtaagatatgaaaagaattt---ggtatatactagaaaaaagatcattcctgaatctaatcatatccaaga |
315 |
Q |
| |
|
||||||||||| || ||| | | | ||||| ||| ||||| |||||||||||||| |||||||||||| |
|
|
| T |
2413223 |
tgtaagatatgggaaaaatataaggatttatacacgaagaaagaccattcctgaatctactcatatccaaga |
2413294 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 386 - 483
Target Start/End: Original strand, 2413298 - 2413395
Alignment:
| Q |
386 |
tgatccgacattacacgatgtaacttcacttgaccctataaactctagtgattcaatttctaaattttctcatccacatgaaccagaatgtaactcat |
483 |
Q |
| |
|
||||||||||||||| || ||||||| ||||||||| ||| ||| |||| ||||||||| ||||||||||| ||||||||| ||||| |||||||| |
|
|
| T |
2413298 |
tgatccgacattacatgaggtaactttgcttgacccttcaaattcttgtgactcaatttctgaattttctcatgcacatgaactagaatctaactcat |
2413395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 65; Significance: 2e-28; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 6721936 - 6722173
Alignment:
| Q |
1 |
tccactcaaaaaggttacatatgttatcatccactatctaataagtattttgtctgttgagatgtcaccttccatgaacaagaaagttactttgttcaaa |
100 |
Q |
| |
|
||||| ||||| ||||||| ||||||||||||||||||| | || | ||| ||| ||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
6721936 |
tccacccaaaagggttacaaatgttatcatccactatctcaaaaattctttctct------atgtcaccttccatgaacaagaaagttactttgttcata |
6722029 |
T |
|
| Q |
101 |
ctcatcttctgggggagactataagtaaggaa-atgagtttcttctacttcccgaccttactttcaggcca-aaattgaggctgaaactagaggtaacaa |
198 |
Q |
| |
|
|| |||||| |||||||| | | |||||||| | ||| |||||||||||| ||||||| | | | ||| || |||||| ||||||| ||||| |||| |
|
|
| T |
6722030 |
cttatcttcagggggagaattcatgtaaggaagacaagtctcttctacttcctgaccttaatctaggaccagaagttgaggttgaaactggaggtgacaa |
6722129 |
T |
|
| Q |
199 |
tgttgagaccaaagttgattatgaaaaagatggaaatgttgaag |
242 |
Q |
| |
|
|||| ||||| ||||||||| |||||| ||| ||||||||||| |
|
|
| T |
6722130 |
tgttaagacctaagttgattctgaaaatcatgtaaatgttgaag |
6722173 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 386 - 474
Target Start/End: Original strand, 6722229 - 6722317
Alignment:
| Q |
386 |
tgatccgacattacacgatgtaacttcacttgaccctataaactctagtgattcaatttctaaattttctcatccacatgaaccagaat |
474 |
Q |
| |
|
||||||||||||||| || ||||||| |||||||| ||| ||| |||||||| ||||| |||||||||| || |||||||||||| |
|
|
| T |
6722229 |
tgatccgacattacatgaggtaactttgcttgacccctcaaattcttgtgattcagtttctgaattttctcacgcaaatgaaccagaat |
6722317 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 65; Significance: 2e-28; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 7 - 257
Target Start/End: Original strand, 41896759 - 41897011
Alignment:
| Q |
7 |
caaaaaggttacatatgttatcatccactatctaataagtattttgtctgttgagatgtcaccttccatgaacaagaaagttactttgttcaaactcatc |
106 |
Q |
| |
|
||||| ||||||| |||||||||||| | |||| | || | ||||||| | ||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
41896759 |
caaaagggttacaaatgttatcatcctccatctcacaaattctttgtctctcgagatgtcaccttccatgaacaagaaatttactttgttcaaactcatc |
41896858 |
T |
|
| Q |
107 |
ttctgggggagactataagtaaggaa-atgagtttcttctacttcccgaccttactttcaggcca-aaattgaggctgaaactagaggtaacaatgttga |
204 |
Q |
| |
|
||| ||||||| | | |||||||| |||||| |||| |||| | ||||||| | | | ||| || |||||| ||||||| || || |||||||||| |
|
|
| T |
41896859 |
ttcagggggagtattcatgtaaggaagatgagtctcttttactacatgaccttaatctaggaccagaagttgaggttgaaactggaagtgacaatgttga |
41896958 |
T |
|
| Q |
205 |
gaccaaagttgattatgaaaaagatggaaatgttgaagttgatgtaagatatg |
257 |
Q |
| |
|
||| ||||||||| |||||| | | |||||||||| ||||||||||||| |
|
|
| T |
41896959 |
gacggaagttgattctgaaaatcaagttaatgttgaagccgatgtaagatatg |
41897011 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 315 - 382
Target Start/End: Original strand, 39499997 - 39500064
Alignment:
| Q |
315 |
ataccataattagtggaggatcaactctttgtctagtgagtcaatcacggggcagcaagccggtcact |
382 |
Q |
| |
|
||||||||||||||||| | || ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39499997 |
ataccataattagtggatgttcgactctttgtctagtgagtcaatcacggggcagcaagccggtcact |
39500064 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 386 - 483
Target Start/End: Original strand, 41897076 - 41897173
Alignment:
| Q |
386 |
tgatccgacattacacgatgtaacttcacttgaccctataaactctagtgattcaatttctaaattttctcatccacatgaaccagaatgtaactcat |
483 |
Q |
| |
|
||||||||||||||| || |||| || ||||||||| ||| ||| |||| ||||||||| ||||||||||| ||||||||| ||||| |||||||| |
|
|
| T |
41897076 |
tgatccgacattacatgaggtaagtttgcttgacccttcaaattcttgtgactcaatttctgaattttctcatgcacatgaactagaatctaactcat |
41897173 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0057 (Bit Score: 64; Significance: 1e-27; HSPs: 3)
Name: scaffold0057
Description:
Target: scaffold0057; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 96 - 253
Target Start/End: Complemental strand, 29152 - 28993
Alignment:
| Q |
96 |
tcaaactcatcttctgggggagactataagtaaggaa-atgagtttcttctacttcccgaccttactttcaggccaaaa-ttgaggctgaaactagaggt |
193 |
Q |
| |
|
||||||||||| | |||| ||| |||| || ||||| |||||| |||||||||||||||||||||| |||| ||| || |||||| ||||||||||||| |
|
|
| T |
29152 |
tcaaactcatcgtaaggggaagaatatatgtcaggaagatgagtctcttctacttcccgaccttactctcagaccagaagttgagggtgaaactagaggt |
29053 |
T |
|
| Q |
194 |
aacaatgttgagaccaaagttgattatgaaaaagatggaaatgttgaagttgatgtaaga |
253 |
Q |
| |
|
||| ||||||||| | ||||||| ||||||||| |||||||||| ||||||||||||| |
|
|
| T |
29052 |
gacattgttgagactacagttgatcttgaaaaagaaggaaatgttggagttgatgtaaga |
28993 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0057; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 120 - 253
Target Start/End: Complemental strand, 49607 - 49472
Alignment:
| Q |
120 |
tataagtaaggaa-atgagtttcttctacttcccgaccttactttcaggccaaaatt-gaggctgaaactagaggtaacaatgttgagaccaaagttgat |
217 |
Q |
| |
|
|||| |||||||| |||||| ||||||||||| |||| ||||| |||| ||| || | |||| |||||||||| ||||||||| ||| |||| ||||||| |
|
|
| T |
49607 |
tatatgtaaggaagatgagtctcttctacttctcgactttactctcagaccagaagtcgagggtgaaactagatgtaacaatggtgacaccacagttgat |
49508 |
T |
|
| Q |
218 |
tatgaaaaagatggaaatgttgaagttgatgtaaga |
253 |
Q |
| |
|
||||||||| |||||||| | ||||||||||||| |
|
|
| T |
49507 |
cttgaaaaagaaggaaatgtcggagttgatgtaaga |
49472 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0057; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 429 - 525
Target Start/End: Complemental strand, 48312 - 48216
Alignment:
| Q |
429 |
tctagtgattcaatttctaaattttctcatccacatgaaccagaatgtaactcattgttacataaggaaccagaatccagcctaataaagcataaga |
525 |
Q |
| |
|
|||||||||||||||||| ||||||| || || | || ||||||| | | ||| | ||||| | ||||||| ||||||||| |||||| ||||||| |
|
|
| T |
48312 |
tctagtgattcaatttctgaattttcagatgcataggatccagaatcttaatcaatcttacaaagggaaccaaaatccagcccaataaaacataaga |
48216 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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