View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1836_low_22 (Length: 507)

Name: NF1836_low_22
Description: NF1836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1836_low_22
NF1836_low_22
[»] chr3 (2 HSPs)
chr3 (18-174)||(10799361-10799519)
chr3 (20-102)||(10808524-10808606)
[»] chr2 (1 HSPs)
chr2 (289-439)||(24732222-24732372)
[»] chr4 (2 HSPs)
chr4 (359-477)||(20505268-20505386)
chr4 (289-393)||(54876343-54876447)
[»] chr6 (1 HSPs)
chr6 (386-483)||(19158760-19158857)


Alignment Details
Target: chr3 (Bit Score: 75; Significance: 3e-34; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 18 - 174
Target Start/End: Original strand, 10799361 - 10799519
Alignment:
Q  18 cgaagtgtgtgtcttatgggagaaattgcgattgggcgatgagagaagaattttcgagtgagattcgagaaaaaagattaatctannnnnnnnnnnnn-- 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||| |                   
T  10799361 cgaagtgtgtgtcttatgggagaaattgcgattgggcgatgagagaagaatttttgagtgagattcgagaaagaagattaatccattttttttttttttt 10799460  T
Q  116 -agaatttcctataatgaagttagtttaagagagaaaaaatgagaaagatgacgatgaag 174  Q
     |||||||||||||||||| ||||||||||| | |||||||| |||||||||||||||||    
T  10799461 tagaatttcctataatgaacttagtttaaga-aaaaaaaatgggaaagatgacgatgaag 10799519  T

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Target: chr3; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 20 - 102
Target Start/End: Original strand, 10808524 - 10808606
Alignment:
Q  20 aagtgtgtgtcttatgggagaaattgcgattgggcgatgagagaagaattttcgagtgagattcgagaaaaaagattaatcta 102  Q
    |||||||||||||||||||||||||| | |||||||||| |||||||||  || |||||||||||||||| ||||||||||||    
T  10808524 aagtgtgtgtcttatgggagaaattgtgcttgggcgatgggagaagaataatctagtgagattcgagaaagaagattaatcta 10808606  T

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Target: chr2 (Bit Score: 51; Significance: 5e-20; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 289 - 439
Target Start/End: Original strand, 24732222 - 24732372
Alignment:
Q  289 aggttttgaggtgtgtggggttctggaggatgtctatatggctcgtaaacgtaatgtcaacggagctgcttttggttttgtccggtatggtaatgttaag 388  Q
    ||||||||||||||||||  || |||||||||| ||| |||||||||||| |||||| || || | ||| ||||||||||| || |||||||| || ||     
T  24732222 aggttttgaggtgtgtggtattatggaggatgtgtatttggctcgtaaacataatgtaaatggtggtgcgtttggttttgtacgctatggtaaggtgaaa 24732321  T
Q  389 gatgtcgataaacttttaaaagcagtaaataacgtgtggtttggggattgg 439  Q
    ||||| || || ||| | |||||  ||||||| ||||||||||| ||||||    
T  24732322 gatgttgagaagcttctgaaagccttaaataatgtgtggtttggcgattgg 24732372  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 359 - 477
Target Start/End: Original strand, 20505268 - 20505386
Alignment:
Q  359 tttggttttgtccggtatggtaatgttaaggatgtcgataaacttttaaaagcagtaaataacgtgtggtttggggattggcgggtggtagctaaggtgt 458  Q
    |||||||||||  | |||||||| |||   |||||||||||||||||||| ||| | || || |||||||||||||| ||    ||||| ||||||||      
T  20505268 tttggttttgtttgatatggtaaggttcgcgatgtcgataaacttttaaaggcactgaaaaatgtgtggtttggggactgtaaagtggtggctaaggtag 20505367  T
Q  459 ccacttttgatcggtttgg 477  Q
    | | |||||||||||||||    
T  20505368 ctagttttgatcggtttgg 20505386  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 289 - 393
Target Start/End: Complemental strand, 54876447 - 54876343
Alignment:
Q  289 aggttttgaggtgtgtggggttctggaggatgtctatatggctcgtaaacgtaatgtcaacggagctgcttttggttttgtccggtatggtaatgttaag 388  Q
    |||||||||||| |||||  |  |||||||||| ||  |||| |||||||||||||| || || | ||| ||||||||||| || ||||| || || |||    
T  54876447 aggttttgaggtatgtggtatattggaggatgtttacttggcacgtaaacgtaatgttaatggtggtgcgtttggttttgttcgttatggcaaagtgaag 54876348  T
Q  389 gatgt 393  Q
    |||||    
T  54876347 gatgt 54876343  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 386 - 483
Target Start/End: Complemental strand, 19158857 - 19158760
Alignment:
Q  386 aaggatgtcgataaacttttaaaagcagtaaataacgtgtggtttggggattggcgggtggtagctaaggtgtccacttttgatcggtttgggaagaa 483  Q
    |||||||| || |||||||| |||||  |||| ||||| |||||||| || |||  ||| ||||| |||||  ||| ||||||||| |||||||||||    
T  19158857 aaggatgttgagaaacttttgaaagcgttaaacaacgtttggtttggtgactggaaggtagtagccaaggttgccagttttgatcgttttgggaagaa 19158760  T

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