View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1836_low_24 (Length: 505)
Name: NF1836_low_24
Description: NF1836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1836_low_24 |
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Alignment Details
Target: chr1 (Bit Score: 430; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 430; E-Value: 0
Query Start/End: Original strand, 1 - 491
Target Start/End: Complemental strand, 12775495 - 12774995
Alignment:
| Q |
1 |
caaaggaaagcttacgagagaaagagaagacacagaatctcaatcaaaatatggaagaaaaccaactcaatagaaaaagaaaagcatcttaggccttttc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12775495 |
caaaggaaagcttacgagagaaagagaagacacagaatctcaatcaaaatatggaagaaaaccaactcaatagaaaaagaaaagcatcttaggccttttc |
12775396 |
T |
|
| Q |
101 |
ctccctatgggcaccaatattctaacaagccctaatccaaatgaactaaaccaaatcaaacaatcactccatagtcttaagaaattttttgcggttataa |
200 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
12775395 |
ctccctatgggcaccaaaattctaacaagccctaatccaaatgaactaaaccaaatcaaacaatcactccatagtcttaagaatttttttgcggttataa |
12775296 |
T |
|
| Q |
201 |
tctaaatttggatgcactacaaagtttcacggttctgtaaaactgcaatttccaccatatcaatcatgttttctgctagtatatataaatgtttgcagcg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||| ||||||||||||||||||||||||||||||||| |||| |
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| T |
12775295 |
tctaaatttggatgcactacaaagtttcacggttctgtgaaactgcaatttcgaccatatcgatcatgttttctgctagtatatataaatgtttgtagcg |
12775196 |
T |
|
| Q |
301 |
ttattgcgaccacaatttaaaccatgctatcaaatatata----------tataagattgcattaacaaaaatcgatagcgaaaaaactcgcagtagaaa |
390 |
Q |
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| T |
12775195 |
tcattgcgaccacaatttaaaccatgctatcaaatatatatatatatatatataagattgcattaacaaaaatcgatagcgaaaaaactcgcaatagaaa |
12775096 |
T |
|
| Q |
391 |
aattggaactgatttattaggtatatgtttattacctggagaagagagtgccacagtcacatctatactccttagtaccacaagtcttagaatgagcttt |
490 |
Q |
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| T |
12775095 |
aattggaactgatttattaggtatatgtttattacctggagaagagagtgccacagtcacatctatactccttagtaccacaagttttagaatgagcttt |
12774996 |
T |
|
| Q |
491 |
c |
491 |
Q |
| |
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| |
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| T |
12774995 |
c |
12774995 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 423 - 491
Target Start/End: Original strand, 12804511 - 12804579
Alignment:
| Q |
423 |
tacctggagaagagagtgccacagtcacatctatactccttagtaccacaagtcttagaatgagctttc |
491 |
Q |
| |
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| T |
12804511 |
taccttgagaagagagtgccacagtcacatctatactccctagtaccacaagtcttagaatgagctttc |
12804579 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 415 - 491
Target Start/End: Complemental strand, 42287251 - 42287175
Alignment:
| Q |
415 |
atgtttattacctggagaagagagtgccacagtcacatctatactccttagtaccacaagtcttagaatgagctttc |
491 |
Q |
| |
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| T |
42287251 |
atgtttgttacctagagaagagggtgccacaatcacatctatattctctagtaccacaagtcttagaatgtgctttc |
42287175 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 422 - 484
Target Start/End: Original strand, 50788818 - 50788880
Alignment:
| Q |
422 |
ttacctggagaagagagtgccacagtcacatctatactccttagtaccacaagtcttagaatg |
484 |
Q |
| |
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|||||||||||||||||||||||||||||| ||||| || | || ||||||||||||||||| |
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| T |
50788818 |
ttacctggagaagagagtgccacagtcacacctatattctctggtgccacaagtcttagaatg |
50788880 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 422 - 491
Target Start/End: Complemental strand, 4160504 - 4160435
Alignment:
| Q |
422 |
ttacctggagaagagagtgccacagtcacatctatactccttagtaccacaagtcttagaatgagctttc |
491 |
Q |
| |
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|||||| |||||||| || ||||||||||| ||||||| ||||| |||||| | || |||||||||||| |
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| T |
4160504 |
ttaccttgagaagagggttccacagtcacacttatactctttagtgccacaaattttggaatgagctttc |
4160435 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 422 - 491
Target Start/End: Original strand, 5788722 - 5788791
Alignment:
| Q |
422 |
ttacctggagaagagagtgccacagtcacatctatactccttagtaccacaagtcttagaatgagctttc |
491 |
Q |
| |
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|||||| |||||||| || ||||||||||||||||| || |||| |||||||| || |||||||||||| |
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| T |
5788722 |
ttaccttgagaagagggttccacagtcacatctatattctctagtgccacaagttttggaatgagctttc |
5788791 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 423 - 479
Target Start/End: Complemental strand, 40040915 - 40040859
Alignment:
| Q |
423 |
tacctggagaagagagtgccacagtcacatctatactccttagtaccacaagtctta |
479 |
Q |
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||||||||||| || |||||||| |||||||| ||||| ||||| |||||| ||||| |
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| T |
40040915 |
tacctggagaatagtgtgccacaatcacatctgtactctttagtgccacaaatctta |
40040859 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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