View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1836_low_25 (Length: 501)

Name: NF1836_low_25
Description: NF1836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1836_low_25
NF1836_low_25
[»] chr7 (6 HSPs)
chr7 (21-487)||(26177322-26177795)
chr7 (21-260)||(19159992-19160235)
chr7 (21-260)||(20759391-20759634)
chr7 (21-197)||(7811146-7811322)
chr7 (126-184)||(6670736-6670794)
chr7 (267-323)||(12686549-12686605)
[»] scaffold0065 (1 HSPs)
scaffold0065 (21-487)||(42117-42588)
[»] chr3 (7 HSPs)
chr3 (21-328)||(2289501-2289811)
chr3 (316-487)||(20303912-20304084)
chr3 (21-199)||(15408953-15409134)
chr3 (22-196)||(20304077-20304261)
chr3 (144-224)||(3570223-3570304)
chr3 (126-197)||(41760648-41760719)
chr3 (126-184)||(51464881-51464939)
[»] scaffold0741 (2 HSPs)
scaffold0741 (21-196)||(6203-6383)
scaffold0741 (399-487)||(6401-6490)
[»] chr5 (3 HSPs)
chr5 (21-196)||(37634812-37634990)
chr5 (399-492)||(37634700-37634794)
chr5 (126-184)||(25802765-25802823)
[»] chr6 (4 HSPs)
chr6 (21-199)||(25823121-25823302)
chr6 (21-199)||(16170816-16170996)
chr6 (126-224)||(21273124-21273225)
chr6 (32-114)||(23667397-23667479)
[»] chr2 (4 HSPs)
chr2 (21-260)||(21862106-21862349)
chr2 (136-197)||(22834162-22834223)
chr2 (126-196)||(18857023-18857093)
chr2 (158-236)||(29807433-29807512)
[»] chr8 (2 HSPs)
chr8 (21-200)||(25820299-25820481)
chr8 (126-197)||(33858666-33858737)
[»] chr1 (7 HSPs)
chr1 (50-242)||(46137016-46137213)
chr1 (138-197)||(15199597-15199656)
chr1 (149-224)||(36776872-36776948)
chr1 (126-222)||(9133247-9133345)
chr1 (126-185)||(159161-159220)
chr1 (143-198)||(15218684-15218739)
chr1 (21-69)||(159281-159329)
[»] chr4 (3 HSPs)
chr4 (136-224)||(1656499-1656588)
chr4 (126-197)||(31924333-31924404)
chr4 (344-426)||(1656718-1656800)
[»] scaffold0073 (1 HSPs)
scaffold0073 (126-224)||(40606-40706)


Alignment Details
Target: chr7 (Bit Score: 294; Significance: 1e-165; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 21 - 487
Target Start/End: Original strand, 26177322 - 26177795
Alignment:
Q  21 cggtgctacaaaaagacttagattttatgcacacttggccatcaaaggcagcagcaaccgaggtaccatttacagaggttgtttccaagtctcatnnnnn 120  Q
    |||||| |||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||| |||||||||||||||||||          
T  26177322 cggtgcaacaaaaagacttagattttatgcacacttggctatcaaaggcagcaacaaccgaggtaccatttacacaggttgtttccaagtctcagaaaaa 26177421  T
Q  121 nnn-----tatgcaaaaagtttcatataaaacccgctctcagggtcctcttccacggtttatatgaatatcattttttggaacattggagaattggtaat 215  Q
            ||||||||||||||| ||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| ||||||||||||||    
T  26177422 aaaaagaatatgcaaaaagtttcgtataaaacccgctctcagggtcctcttccaccgtttaaatgaatatcattttttggaacatcggagaattggtaat 26177521  T
Q  216 aatgattcctgacttgctttctctgattggtgtcggctacataatccg-cattggtatttattgcggaacctatggtttattatgattctactccgagtt 314  Q
     ||||||||||||||||||||||||||||||||||||||||||||||| ||| | |||||||||||||||||||||||||||||| || || ||||||||    
T  26177522 catgattcctgacttgctttctctgattggtgtcggctacataatccgtcatggttatttattgcggaacctatggtttattatgcttttattccgagtt 26177621  T
Q  315 ggttttggataaatgtatgtgttactaagaataatagggagcctctgattcctgaaatgtgggcggtgtgaggttctgactttgtatatacagtaatttt 414  Q
    ||||||||   ||||||||||||||||||||||| ||||||||||| ||| || | |||||| |||||||||||||||||| | ||||||||||||||||    
T  26177622 ggttttgggggaatgtatgtgttactaagaataacagggagcctctcatttcttacatgtggtcggtgtgaggttctgactctatatatacagtaatttt 26177721  T
Q  415 tgtctcttctca-tttgcagaggaacaaaattatagattgcaggtatttatggatgattattagttctcatatt 487  Q
    |||||||||| | | |||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||    
T  26177722 tgtctcttcttagtctgcagaggaacaaaattatatattgcaggtatttatggatgattatttgttctcatatt 26177795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 21 - 260
Target Start/End: Original strand, 19159992 - 19160235
Alignment:
Q  21 cggtgctacaaaaagacttagattttatgcacacttggccatcaaaggcagcagcaaccgaggtaccatttacagaggttgtttccaagtctc---atnn 117  Q
    ||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||| ||||   |       
T  19159992 cggtgctacaaaaagacttagatttcatgcacacttggctatcaaaggcagcagcaaccgaggtaccatttatagaggttgtttccaattctcagaagaa 19160091  T
Q  118 nnnnnntatgcaaaaagtttcatataaaacccgctctcagggtcctcttccacggtttatatgaatatcattttttggaaca-ttggagaattggtaata 216  Q
          |||| |||||||| ||||||||||||||||||||||||||||||||| ||||| || ||||| || |||||||| | | ||  |||||||||||    
T  19160092 gaaaaatatggaaaaagttccatataaaacccgctctcagggtcctcttccaccgtttaaataaatattatcttttggaaaactcgggaaattggtaata 19160191  T
Q  217 atgattcctgacttgctttctctgattggtgtcggctacataat 260  Q
     ||||| | |||||||||||||||||  ||||||||||||||||    
T  19160192 ttgattaccgacttgctttctctgatatgtgtcggctacataat 19160235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 21 - 260
Target Start/End: Original strand, 20759391 - 20759634
Alignment:
Q  21 cggtgctacaaaaagacttagattttatgcacacttggccatcaaaggcagcagcaaccgaggtaccatttacagaggttgtttccaagtctc---atnn 117  Q
    ||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||| ||||   |       
T  20759391 cggtgctacaaaaagacttagatttcatgcacacttggctatcaaaggcagcagcaaccgaggtaccatttatagaggttgtttccaattctcagaagaa 20759490  T
Q  118 nnnnnntatgcaaaaagtttcatataaaacccgctctcagggtcctcttccacggtttatatgaatatcattttttggaaca-ttggagaattggtaata 216  Q
          |||| |||||||| ||||||||||||||||||||||||||||||||| ||||| || ||||| || |||||||| | | ||  |||||||||||    
T  20759491 gaaaaatatggaaaaagttccatataaaacccgctctcagggtcctcttccaccgtttaaataaatattatcttttggaaaactcgggaaattggtaata 20759590  T
Q  217 atgattcctgacttgctttctctgattggtgtcggctacataat 260  Q
     ||||| | |||||||||||||||||  ||||||||||||||||    
T  20759591 ttgattaccgacttgctttctctgatatgtgtcggctacataat 20759634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 21 - 197
Target Start/End: Complemental strand, 7811322 - 7811146
Alignment:
Q  21 cggtgctacaaaaagacttagattttatgcacacttggccatcaaaggcagcagcaaccgaggtaccatttacagaggttgtttccaagtctcatnnnnn 120  Q
    ||||||| ||||||||||||||||||||||| ||||||  | |  ||||||| |  || || | ||||||||||||||| ||||| |||||| |          
T  7811322 cggtgctgcaaaaagacttagattttatgcaaacttggttagcggaggcagctgtgactgatgcaccatttacagaggtagtttcaaagtcttagaaaaa 7811223  T
Q  121 nnntatgcaaaaagtttcatataaaacccgctctcagggtcctcttccacggtttatatgaatatcattttttggaa 197  Q
       | || |||||| |||||| |||||||| ||||| ||| ||||||| | ||||| |||||||| |||| ||||||    
T  7811222 gaatttgaaaaaagcttcatacaaaacccgttctcaaggtactcttccgccgtttaaatgaatattatttcttggaa 7811146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 126 - 184
Target Start/End: Complemental strand, 6670794 - 6670736
Alignment:
Q  126 tgcaaaaagtttcatataaaacccgctctcagggtcctcttccacggtttatatgaata 184  Q
    ||||||| | |||||| |||||||||||||||||||||||||| | ||||| |||||||    
T  6670794 tgcaaaaggcttcatacaaaacccgctctcagggtcctcttcctccgtttaaatgaata 6670736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 267 - 323
Target Start/End: Complemental strand, 12686605 - 12686549
Alignment:
Q  267 tggtatttattgcggaacctatggtttattatgattctactccgagttggttttgga 323  Q
    |||| |||||||| |||||||||||  | |||||||||| ||||| |||||||||||    
T  12686605 tggtttttattgcagaacctatggtggagtatgattctattccgaattggttttgga 12686549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0065 (Bit Score: 280; Significance: 1e-156; HSPs: 1)
Name: scaffold0065
Description:

Target: scaffold0065; HSP #1
Raw Score: 280; E-Value: 1e-156
Query Start/End: Original strand, 21 - 487
Target Start/End: Original strand, 42117 - 42588
Alignment:
Q  21 cggtgctacaaaaagacttagattttatgcacacttggccatcaaaggcagcagcaaccgaggtaccatttacagaggttgtttccaagtctcatnnnnn 120  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||| | |||||||||||||||||          
T  42117 cggtgctacaaaaagacttagattttatgcacacttggctatcaaaggcagcaacaaccgaggtaccatttacaaatgttgtttccaagtctcagaaaaa 42216  T
Q  121 nnn----tatgcaaaaagtttcatataaaacccgctctcagggtcctcttccacggtttatatgaatatcatttttt--ggaacattggagaattggtaa 214  Q
           | |||||||||||| ||||||||||| |||||||||||||||||||| ||||| ||||||||||||||||  ||||||| |||||||||||||    
T  42217 aaaagaatttgcaaaaagttttatataaaacccactctcagggtcctcttccaccgtttaaatgaatatcattttttttggaacatcggagaattggtaa 42316  T
Q  215 taatgattcctgacttgctttctctgattggtgtcggctacataatccg-cattggtatttattgcggaacctatggtttattatgattctactccgagt 313  Q
    ||||||  ||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||| || || |||||||    
T  42317 taatga--cctgacttgctttctctgattggtgtcggctacataatccgtcatgggtatttattgcggaacctatggtttattatgcttttattccgagt 42414  T
Q  314 tggttttggataaatgtatgtgttactaagaataatagggagcctctgattcctgaaatgtgggcggtgtgaggttctgactttgtatatacagtaattt 413  Q
    |||||||||| ||||||||||||||||||||||||| ||||||||||  ||||| | ||||||||||||||||||||||||| |||||||| ||||||||    
T  42415 tggttttggagaaatgtatgtgttactaagaataatggggagcctctcgttcctaacatgtgggcggtgtgaggttctgactctgtatataaagtaattt 42514  T
Q  414 ttgtctcttctca-tttgcagaggaacaaaattatagattgcaggtatttatggatgattattagttctcatatt 487  Q
    ||||||||||||| | |||||||||||||||||||| |||||| |||||||||||||| |||| |||||||||||    
T  42515 ttgtctcttctcagtctgcagaggaacaaaattatatattgca-gtatttatggatgactatttgttctcatatt 42588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 159; Significance: 2e-84; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 21 - 328
Target Start/End: Complemental strand, 2289811 - 2289501
Alignment:
Q  21 cggtgctacaaaaagacttagattttatgcacacttggccatcaaaggcagcagcaaccgaggtaccatttacagaggttgtttccaagtctcatnnnnn 120  Q
    ||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |          
T  2289811 cggtgctacaaaaagacttagattttatgaacacttggctatcaaaggcagcagcaaccgaggtaccatttacagaggttgtttccaagtctaaaaataa 2289712  T
Q  121 nnn-tatgcaaaaagtttcatataaaacccgctctcagggtcctcttccacggtttatatgaatatcattttttggaacatt-ggagaattggtaataat 218  Q
        ||||||||||||||||||||||||  ||||||||||||||||||||| ||||| ||||||||| |||| ||||||||| || ||||||||||||||    
T  2289711 agaatatgcaaaaagtttcatataaaacatgctctcagggtcctcttccaccgtttaaatgaatatctttttatggaacattcggggaattggtaataat 2289612  T
Q  219 gattcctgacttgctttctctgattggtgtcggctacataatccg-cattggtatttattgcggaacctatggtttattatgattctactccgagttggt 317  Q
    |||||  | || ||||||||| ||  | |||||||| |||||| | |||||||||||||||  ||||||||||||||||||| ||||| |||||||||||    
T  2289611 gattctcggctcgctttctctaatatgggtcggctagataatctgtcattggtatttattgaagaacctatggtttattatgcttctattccgagttggt 2289512  T
Q  318 tttggataaat 328  Q
    |||||| ||||    
T  2289511 tttggagaaat 2289501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 316 - 487
Target Start/End: Complemental strand, 20304084 - 20303912
Alignment:
Q  316 gttttggataaatgtatgtgttactaagaataatagggagcctctgattcctgaaatgtgggcggtgtgaggttctgactttgtatatacagtaattttt 415  Q
    ||||||||  ||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||| ||||| |||||||||||||||||    
T  20304084 gttttggaggaatgtatgtgttactaagaataatagggagcctctcattcctgacatgtgggcggtgtgaggttctaactttatatatacagtaattttt 20303985  T
Q  416 gtctcttctca-tttgcagaggaacaaaattatagattgcaggtatttatggatgattattagttctcatatt 487  Q
    ||||||||||| | |||||||||||||||||||| ||||||||||||||| |||||||||| |||||||||||    
T  20303984 gtctcttctcagtctgcagaggaacaaaattatatattgcaggtatttatagatgattatttgttctcatatt 20303912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 21 - 199
Target Start/End: Original strand, 15408953 - 15409134
Alignment:
Q  21 cggtgctacaaaaagacttagattttatgcacacttggccatcaaaggcagcagcaaccgaggtaccatttacagaggttgtttccaagtctc---atnn 117  Q
    ||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||   |       
T  15408953 cggtgctacaaaaagacttagatttcatgcacacttggctatcaaaggcagcagcaaccgaggtaccatttatagaggttgtttccaagtctcagaagaa 15409052  T
Q  118 nnnnnntatgcaaaaagtttcatataaaacccgctctcagggtcctcttccacggtttatatgaatatcattttttggaaca 199  Q
          |||||||||| || ||||||||||||||||||| ||||||||||||| || || ||||||||||| ||||||||||    
T  15409053 gaaaaatatgcaaaaaattccatataaaacccgctctcaaggtcctcttccaccgtctaaatgaatatcatcttttggaaca 15409134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 22 - 196
Target Start/End: Complemental strand, 20304261 - 20304077
Alignment:
Q  22 ggtgctacaaaaagacttagattttatgcacacttggccatcaaaggcagcagcaaccgaggtaccatttacagaggttgtttccaagtctc-------- 113  Q
    |||||||||||||||||||||||||||||||||||||| ||||||| ||||||| |||||||||||||||||| | ||||||||||||||||            
T  20304261 ggtgctacaaaaagacttagattttatgcacacttggctatcaaagccagcagctaccgaggtaccatttacacaagttgtttccaagtctcagaaaaaa 20304162  T
Q  114 --atnnnnnnnntatgcaaaaagtttcatataaaacccgctctcagggtcctcttccacggtttatatgaatatcattttttgga 196  Q
      |         ||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| |||||||    
T  20304161 caaaaaaaaaaatatgcaaaaagtttcatataaaacccgctctcagggtcctcttccaccgtttaaatgaatatcatgttttgga 20304077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 144 - 224
Target Start/End: Complemental strand, 3570304 - 3570223
Alignment:
Q  144 aaacccgctctcagggtcctcttccacggtttatatgaatatcattttttggaacatt-ggagaattggtaataatgattcc 224  Q
    ||||||||||||| || |||||||| | ||||| |||||||| |||||||||||  || || | ||||||||||||||||||    
T  3570304 aaacccgctctcaaggacctcttcctccgtttaaatgaatattattttttggaaagttcgggggattggtaataatgattcc 3570223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 126 - 197
Target Start/End: Complemental strand, 41760719 - 41760648
Alignment:
Q  126 tgcaaaaagtttcatataaaacccgctctcagggtcctcttccacggtttatatgaatatcattttttggaa 197  Q
    ||||||| ||| |||| |||||||||||||||||||| |  |||| ||||| |||||||| |||| ||||||    
T  41760719 tgcaaaaggttgcatacaaaacccgctctcagggtccccgcccaccgtttaaatgaatattatttattggaa 41760648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 126 - 184
Target Start/End: Complemental strand, 51464939 - 51464881
Alignment:
Q  126 tgcaaaaagtttcatataaaacccgctctcagggtcctcttccacggtttatatgaata 184  Q
    ||||||| | |||||| |||||| ||||||||||||||||||| | ||||| |||||||    
T  51464939 tgcaaaaggcttcatacaaaaccagctctcagggtcctcttcctccgtttaaatgaata 51464881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0741 (Bit Score: 105; Significance: 3e-52; HSPs: 2)
Name: scaffold0741
Description:

Target: scaffold0741; HSP #1
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 21 - 196
Target Start/End: Original strand, 6203 - 6383
Alignment:
Q  21 cggtgctacaaaaagacttagattttatgcacacttggccatcaaaggcagcagcaaccgaggtaccatttacagaggttgtttccaagtctc-----at 115  Q
    ||||||||||||||||||| ||||||||||||||||||| ||||||||||||||| |||||||||||||||||| ||||||||||||||||||     |     
T  6203 cggtgctacaaaaagacttggattttatgcacacttggctatcaaaggcagcagctaccgaggtaccatttacacaggttgtttccaagtctcagaaaaa 6302  T
Q  116 nnnnnnnntatgcaaaaagtttcatataaaacccgctctcagggtcctcttccacggtttatatgaatatcattttttgga 196  Q
            ||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| |||||||    
T  6303 aaaaagaatatgcaaaaagtttcatataaaacccgctctcagggtcctcttccaccgtttaaatgaatatcatgttttgga 6383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0741; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 399 - 487
Target Start/End: Original strand, 6401 - 6490
Alignment:
Q  399 tatatacagtaatttttgtctcttctcatt-tgcagaggaacaaaattatagattgcaggtatttatggatgattattagttctcatatt 487  Q
    |||||||||||||||||||||||||||| | |||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||    
T  6401 tatatacagtaatttttgtctcttctcagtctgcagaggaacaaaattatatattgcaggtatttatggatgattatttgttctcatatt 6490  T

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Target: chr5 (Bit Score: 105; Significance: 3e-52; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 21 - 196
Target Start/End: Complemental strand, 37634990 - 37634812
Alignment:
Q  21 cggtgctacaaaaagacttagattttatgcacacttggccatcaaaggcagcagcaaccgaggtaccatttacagaggttgtttccaagtctc---atnn 117  Q
    ||||||||||||||||||| ||||||||||||||||||| ||||||||||||||| |||||||||||||||||| ||||||||||||||||||   |       
T  37634990 cggtgctacaaaaagacttggattttatgcacacttggctatcaaaggcagcagctaccgaggtaccatttacacaggttgtttccaagtctcagaaaaa 37634891  T
Q  118 nnnnnntatgcaaaaagtttcatataaaacccgctctcagggtcctcttccacggtttatatgaatatcattttttgga 196  Q
          ||||||||||||||||||||||||||||||||| ||||||||||||| ||||| ||||||||||| |||||||    
T  37634890 aaagaatatgcaaaaagtttcatataaaacccgctctcatggtcctcttccaccgtttaaatgaatatcatgttttgga 37634812  T

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Target: chr5; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 399 - 492
Target Start/End: Complemental strand, 37634794 - 37634700
Alignment:
Q  399 tatatacagtaatttttgtctcttctcatt-tgcagaggaacaaaattatagattgcaggtatttatggatgattattagttctcatattcttcg 492  Q
    ||||||| |||||||||||||||||||| | |||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||| ||||    
T  37634794 tatatacggtaatttttgtctcttctcagtatgcagaggaacaaaattatatattgcaggtatttctggatgattattagttctcatatttttcg 37634700  T

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Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 126 - 184
Target Start/End: Original strand, 25802765 - 25802823
Alignment:
Q  126 tgcaaaaagtttcatataaaacccgctctcagggtcctcttccacggtttatatgaata 184  Q
    ||||||| | |||||| |||||||||||||||||||||||||| | ||||| |||||||    
T  25802765 tgcaaaaggcttcatacaaaacccgctctcagggtcctcttcctccgtttaaatgaata 25802823  T

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Target: chr6 (Bit Score: 104; Significance: 1e-51; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 21 - 199
Target Start/End: Original strand, 25823121 - 25823302
Alignment:
Q  21 cggtgctacaaaaagacttagattttatgcacacttggccatcaaaggcagcagcaaccgaggtaccatttacagaggttgtttccaagtctc---atnn 117  Q
    ||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||   |       
T  25823121 cggtgctacaaaaagacttagatttcatgcacacttggctatcaaaggcagcagcaaccgaggtaccatttatagaggttgtttccaagtctcagaagaa 25823220  T
Q  118 nnnnnntatgcaaaaagtttcatataaaacccgctctcagggtcctcttccacggtttatatgaatatcattttttggaaca 199  Q
          |||||||||| || ||||||||||||||||||||||||||||||||| || || ||||||||||| ||||||||||    
T  25823221 gaaaaatatgcaaaaaattccatataaaacccgctctcagggtcctcttccaccgtctaaatgaatatcatcttttggaaca 25823302  T

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Target: chr6; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 21 - 199
Target Start/End: Original strand, 16170816 - 16170996
Alignment:
Q  21 cggtgctacaaaaagacttagattttatgcacacttggccatcaaaggcagcagcaaccgaggtaccatttacagaggttgtttccaagtctc---atnn 117  Q
    ||||| ||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||| ||||||| |||| |||||||   |       
T  16170816 cggtgttacaaaaagacttagatttcatgcacacttggctatcaaaggcagcagcaaccgaggtaccatttatagaggttatttctaagtctcagaagaa 16170915  T
Q  118 nnnnnntatgcaaaaagtttcatataaaacccgctctcagggtcctcttccacggtttatatgaatatcattttttggaaca 199  Q
          |||||||||| || ||||||||||||||||||| ||||||||||||| || || ||||||||||| ||||||||||    
T  16170916 gaaaaatatgcaaaaaattccatataaaacccgctctca-ggtcctcttccaccgtctaaatgaatatcatcttttggaaca 16170996  T

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Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 126 - 224
Target Start/End: Original strand, 21273124 - 21273225
Alignment:
Q  126 tgcaaaaagtttcatataaaacccgctctcagggtcctcttccacggtttatatgaata--tcattttttggaacat-tggagaattggtaataatgatt 222  Q
    ||||||| | |||||| |||||||||||||||||||||||||| | ||||| |||||||  |  |||||||||||||  || | ||||||||||||||||    
T  21273124 tgcaaaaggcttcatacaaaacccgctctcagggtcctcttcctccgtttaaatgaatatttttttttttggaacatccgggggattggtaataatgatt 21273223  T
Q  223 cc 224  Q
    ||    
T  21273224 cc 21273225  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 32 - 114
Target Start/End: Complemental strand, 23667479 - 23667397
Alignment:
Q  32 aaagacttagattttatgcacacttggccatcaaaggcagcagcaaccgaggtaccatttacagaggttgtttccaagtctca 114  Q
    ||||| |||||||||||||| ||||||| | ||||||| || |  |  ||||| ||||||| |||||| ||||||||||||||    
T  23667479 aaagaattagattttatgcaaacttggctagcaaaggctgctgtgaatgaggtgccatttaaagaggtagtttccaagtctca 23667397  T

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Target: chr2 (Bit Score: 94; Significance: 1e-45; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 21 - 260
Target Start/End: Original strand, 21862106 - 21862349
Alignment:
Q  21 cggtgctacaaaaagacttagattttatgcacacttggccatcaaaggcagcagcaaccgaggtaccatttacagaggttgtttccaagtctc---atnn 117  Q
    ||||||||||||||||||||||||| ||||||||||||| |||||||| || |||| ||||||||||||||| |||| |||||||||||||||   |       
T  21862106 cggtgctacaaaaagacttagatttcatgcacacttggctatcaaaggtaggagcatccgaggtaccatttatagagattgtttccaagtctcagaagaa 21862205  T
Q  118 nnnnnntatgcaaaaagtttcatataaaacccgctctcagggtcctcttccacggtttatatgaatatcattttttggaacattggaga-attggtaata 216  Q
          | || |||| ||| |||||||||||||||||||||||||||||||||  |||| ||||||||||| ||||||||||   | || ||||||||||    
T  21862206 gaaaaatgtggaaaatgttccatataaaacccgctctcagggtcctcttccaccatttaaatgaatatcatcttttggaacacccgggacattggtaata 21862305  T
Q  217 atgattcctgacttgctttctctgattggtgtcggctacataat 260  Q
     ||||| | |||||||||||||||||  ||||||||||| ||||    
T  21862306 ttgattaccgacttgctttctctgatatgtgtcggctacgtaat 21862349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 136 - 197
Target Start/End: Complemental strand, 22834223 - 22834162
Alignment:
Q  136 ttcatataaaacccgctctcagggtcctcttccacggtttatatgaatatcattttttggaa 197  Q
    |||||| |||||||||||||||||||||||||||| ||||| |||||||| |||||||||||    
T  22834223 ttcataaaaaacccgctctcagggtcctcttccactgtttaaatgaatattattttttggaa 22834162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 126 - 196
Target Start/End: Original strand, 18857023 - 18857093
Alignment:
Q  126 tgcaaaaagtttcatataaaacccgctctcagggtcctcttccacggtttatatgaatatcattttttgga 196  Q
    ||||||| | |||||| |||||||||||||| ||||||||||| | ||||| |||||||| | ||||||||    
T  18857023 tgcaaaaggcttcatacaaaacccgctctcaaggtcctcttcctccgtttaaatgaatattagtttttgga 18857093  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 158 - 236
Target Start/End: Original strand, 29807433 - 29807512
Alignment:
Q  158 ggtcctcttccacggtttatatgaatatcattttttggaacatt-ggagaattggtaataatgattcctgacttgctttc 236  Q
    ||||||||||||| | ||| || ||||| |||| |||||||||  |||| |||||||||||||||||| | |||||||||    
T  29807433 ggtcctcttccaccgcttaaataaatattatttattggaacatccggaggattggtaataatgattcccgtcttgctttc 29807512  T

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Target: chr8 (Bit Score: 85; Significance: 3e-40; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 21 - 200
Target Start/End: Original strand, 25820299 - 25820481
Alignment:
Q  21 cggtgctacaaaaagacttagattttatgcacacttggccatcaaaggcagcagcaaccgaggtaccatttacagaggttgtttccaagtctc---atnn 117  Q
    ||||||||||||||||||| |||||||||| || ||||| ||| || ||||||||||||||||||||||||||||||||||| || |||||||   |       
T  25820299 cggtgctacaaaaagacttggattttatgcgcaattggctatctaaagcagcagcaaccgaggtaccatttacagaggttgtgtcaaagtctcggaaaaa 25820398  T
Q  118 nnnnnntatgcaaaaagtttcatataaaacccgctctcagggtcctcttccacggtttatatgaatatcattttttggaacat 200  Q
          ||||||||||||| |||| ||||| |||||||||||||||||||||| ||||| |||||||| ||||||||||||||    
T  25820399 taagaatatgcaaaaagttccatacaaaactcgctctcagggtcctcttccaccgtttaaatgaatataattttttggaacat 25820481  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 126 - 197
Target Start/End: Complemental strand, 33858737 - 33858666
Alignment:
Q  126 tgcaaaaagtttcatataaaacccgctctcagggtcctcttccacggtttatatgaatatcattttttggaa 197  Q
    ||||||| ||| |||| |||||||||||||||||||| |  |||| ||||| |||||||| |||| ||||||    
T  33858737 tgcaaaaggttgcatacaaaacccgctctcagggtccccgcccaccgtttaaatgaatattatttattggaa 33858666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 77; Significance: 2e-35; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 50 - 242
Target Start/End: Original strand, 46137016 - 46137213
Alignment:
Q  50 cacacttggccatcaaaggcagcagcaaccgaggtaccatttacagaggttgtttccaagtctcatnnnnnnnntatgcaaaaagt----ttcatataaa 145  Q
    |||||||||| ||||||| ||||||||||||||||| |||||| |||||||||||||||||||||          |   ||||| |    ||||||||||    
T  46137016 cacacttggctatcaaagacagcagcaaccgaggtatcatttatagaggttgtttccaagtctcagaagaagaaaaaaaaaaaaatgctattcatataaa 46137115  T
Q  146 acccgctctcagggtcctcttccacggtttatatgaatatcattttttggaacat-tggagaattggtaataatgattcctgacttgctttctctgat 242  Q
    ||||||||||| ||||||||||||| ||||| |||||||| ||||||||||||||  || |||||||||||| ||||||| |||||||||||||||||    
T  46137116 acccgctctcaaggtcctcttccaccgtttaaatgaatattattttttggaacatccggggaattggtaatattgattcccgacttgctttctctgat 46137213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 138 - 197
Target Start/End: Complemental strand, 15199656 - 15199597
Alignment:
Q  138 catataaaacccgctctcagggtcctcttccacggtttatatgaatatcattttttggaa 197  Q
    |||| |||||||||||||||||||||||||||| ||||| ||| |||| |||||||||||    
T  15199656 catacaaaacccgctctcagggtcctcttccaccgtttaaatgtatattattttttggaa 15199597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 149 - 224
Target Start/End: Complemental strand, 36776948 - 36776872
Alignment:
Q  149 cgctctcagggtcctcttccacggtttatatgaatatcattttttggaacatt-ggagaattggtaataatgattcc 224  Q
    |||||||||||||||||||| | ||||| || ||||| ||||||||||||||| || | ||||||||||||| ||||    
T  36776948 cgctctcagggtcctcttcctctgtttaaataaatattattttttggaacattcgggggattggtaataatggttcc 36776872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 126 - 222
Target Start/End: Complemental strand, 9133345 - 9133247
Alignment:
Q  126 tgcaaaaagtttcatataaaacccgctctcagggtcctcttccacggtttatatgaatat-cattttttggaacat-tggagaattggtaataatgatt 222  Q
    ||||||| | |||||| |||||||||||||| ||||||||||| | ||||| ||||||||   |||||||||||||  || | ||||||||||||||||    
T  9133345 tgcaaaaggcttcatacaaaacccgctctcaaggtcctcttcctccgtttaaatgaatatattttttttggaacatccgggggattggtaataatgatt 9133247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 126 - 185
Target Start/End: Complemental strand, 159220 - 159161
Alignment:
Q  126 tgcaaaaagtttcatataaaacccgctctcagggtcctcttccacggtttatatgaatat 185  Q
    ||||||| | ||| || |||||||||||||||||||||||||| | ||||| ||||||||    
T  159220 tgcaaaagggttcttacaaaacccgctctcagggtcctcttcctccgtttaaatgaatat 159161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 143 - 198
Target Start/End: Complemental strand, 15218739 - 15218684
Alignment:
Q  143 aaaacccgctctcagggtcctcttccacggtttatatgaatatcattttttggaac 198  Q
    |||||||  ||||||||||||||||||| ||||| |||||||| ||||||| ||||    
T  15218739 aaaacccattctcagggtcctcttccaccgtttaaatgaatattattttttagaac 15218684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 21 - 69
Target Start/End: Complemental strand, 159329 - 159281
Alignment:
Q  21 cggtgctacaaaaagacttagattttatgcacacttggccatcaaaggc 69  Q
    ||||||| || |||||||||||||||||||| ||||||| | |||||||    
T  159329 cggtgctgcagaaagacttagattttatgcaaacttggctagcaaaggc 159281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000003; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 136 - 224
Target Start/End: Original strand, 1656499 - 1656588
Alignment:
Q  136 ttcatataaaacccgctctcagggtcctcttccacggtttatatgaatatcattttttggaacatt-ggagaattggtaataatgattcc 224  Q
    |||||||||||||||||||||||| ||||||| |   |||| |||||||| |||||||  |||||| || | ||||||||||||||||||    
T  1656499 ttcatataaaacccgctctcagggacctcttctattctttaaatgaatattatttttttaaacattcgggggattggtaataatgattcc 1656588  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 126 - 197
Target Start/End: Original strand, 31924333 - 31924404
Alignment:
Q  126 tgcaaaaagtttcatataaaacccgctctcagggtcctcttccacggtttatatgaatatcattttttggaa 197  Q
    ||||||| ||| |||| |||||||||||||||||||| |  |||| ||||| |||||||| |||| ||||||    
T  31924333 tgcaaaaggttgcatacaaaacccgctctcagggtccccgcccaccgtttaaatgaatattatttattggaa 31924404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 344 - 426
Target Start/End: Original strand, 1656718 - 1656800
Alignment:
Q  344 aataatagggagcctctgattcctgaaatgtgggcggtgtgaggttctgactttgtatatacagtaatttttgtctcttctca 426  Q
    |||| |||||||||||| |||||| |  | ||||  ||||| ||||| || ||||||||||| || |||||||||||||||||    
T  1656718 aatattagggagcctctcattcctaacctctgggttgtgtgcggttcggaatttgtatatactgtgatttttgtctcttctca 1656800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0073 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0073
Description:

Target: scaffold0073; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 126 - 224
Target Start/End: Complemental strand, 40706 - 40606
Alignment:
Q  126 tgcaaaaagtttcatataaaacccgctctcagggtcctcttccacggtttatatgaat-atcattttttggaacatt-ggagaattggtaataatgattc 223  Q
    ||||||| | |||||| ||||||||||||||||||||||||||   ||||| |||||| ||  | |||||||| ||| || | |||||||||||||||||    
T  40706 tgcaaaaggcttcatacaaaacccgctctcagggtcctcttccttcgtttaaatgaataattttgttttggaagattcgggggattggtaataatgattc 40607  T
Q  224 c 224  Q
    |    
T  40606 c 40606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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