View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1836_low_27 (Length: 485)
Name: NF1836_low_27
Description: NF1836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1836_low_27 |
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Alignment Details
Target: chr7 (Bit Score: 417; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 417; E-Value: 0
Query Start/End: Original strand, 19 - 477
Target Start/End: Original strand, 46957533 - 46957999
Alignment:
| Q |
19 |
aaaggtagatgcaacttgcaagatttcaagaccacgaattaatatatataaatctaatacacatatgaattgaataaccaaaacattctggctagataga |
118 |
Q |
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| T |
46957533 |
aaaggtagatgcaacttgcaagatttcaagaccacgaattaatatatataaatctaatacacatatgaattgaataaccaaaacattctggctagataga |
46957632 |
T |
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| Q |
119 |
ctaaagaattatttgttctgattctcaaaaaggctaccagtgaatttttctaattactatcgtattatttttcaaatacaaagggttgcnnnnnnnacct |
218 |
Q |
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| T |
46957633 |
ctaaagaattatttgttctgattctcaaaaaggctaccagtgaatttttctaattactatcgtattatttttcaaatacaaagggttgctttttttacct |
46957732 |
T |
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| Q |
219 |
--------aatcaaactagttttttctttatcaaaactaaccaaatttgttaatttgaacggtaagtgaaaagggaaacttacccaaagaaccaagagga |
310 |
Q |
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| T |
46957733 |
atacacctaatcaaactagttttttctttatcaaaactaaccaaatttgttaatttgaacggtaagtgaaaagggaaacttacccaaagaaccaagagga |
46957832 |
T |
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| Q |
311 |
tattcgactgaagaacagtaacaatgatgacattgaggacaaggagattgcttgaagcgccagcgtgatggtggtccaattgtgaatacaatgtaacaca |
410 |
Q |
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| T |
46957833 |
tattcgactgaagaacagtaacaatgatgacattgaggacaaggagattgcttgaagcgccagcgtgatggtggtccaattgtgaatacaatgtaacaca |
46957932 |
T |
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| Q |
411 |
cactcatccaaaccaaaacccacttcaaaacaccataagaacattgtctttgttcattttgatgatg |
477 |
Q |
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| T |
46957933 |
cactcatccaaaccaaaacccacttcaaaacaccataagaacattgtctttgttcattttgatgatg |
46957999 |
T |
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