View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1836_low_28 (Length: 478)
Name: NF1836_low_28
Description: NF1836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1836_low_28 |
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Alignment Details
Target: chr4 (Bit Score: 287; Significance: 1e-161; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 1 - 330
Target Start/End: Original strand, 46502836 - 46503166
Alignment:
| Q |
1 |
aaaactaactaactaaaaacacatgacttgagaattcaaatgacttnnnnnnnncaaagacaaatttacatatgattttgtaattttaatatatgtatgt |
100 |
Q |
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||||||| | |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46502836 |
aaaactagccaactaaaaacacatgacttgagaattcaaatgacttaaaaaaaacaaagacaaatttacatatgattttgtaattttaatatatgtatgt |
46502935 |
T |
|
| Q |
101 |
act-atttaacatttaaggatgaaaaagactatttagccctatgttttccattggttcttacttctttgtaaggaagttacaattctctctgctttatct |
199 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
46502936 |
acttatttaacatttaaggatgaaaaagactatttagccctatgttttccattggttcttgcttctttgtaaggaagttacaattctctctgctttatct |
46503035 |
T |
|
| Q |
200 |
catactttttcttttgtctctttctctcacataaaccaactttattcccactaaactcacctctaaaaagaagatgatcctctcttgatcctccttgagt |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46503036 |
catactttttcttttgtctctttctctcacataaaccaactttattcccactaaactcacctctaaaaagaagatgatcctctcttgatcctccttgagt |
46503135 |
T |
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| Q |
300 |
tcataaaccaacataccttcccttttatata |
330 |
Q |
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|
||||||||||||||||||||||||||||||| |
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| T |
46503136 |
tcataaaccaacataccttcccttttatata |
46503166 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 357 - 461
Target Start/End: Original strand, 46503193 - 46503297
Alignment:
| Q |
357 |
ccccacaagaactacaaagcaataagccaaacactctcttttgctcttgtttcttcctacatacaaaccaccttcttttctattttgtcatatgaacata |
456 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46503193 |
ccccacaagaactacaaagcaataagccaaacactctcttttgctcttgtttcttcctacatacaaaccaccttcttttctattttgtcatatgaacata |
46503292 |
T |
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| Q |
457 |
tctat |
461 |
Q |
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||||| |
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| T |
46503293 |
tctat |
46503297 |
T |
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