View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1836_low_29 (Length: 477)
Name: NF1836_low_29
Description: NF1836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1836_low_29 |
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Alignment Details
Target: chr3 (Bit Score: 381; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 14 - 460
Target Start/End: Original strand, 36207444 - 36207889
Alignment:
| Q |
14 |
gaagagtacctacaggagccaaccctttacacaataagaaatagtagtatagtagcagctatttatattttccatgtacagggaagtatatatacatagt |
113 |
Q |
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| T |
36207444 |
gaagagtacctacaggagccaaccctttacacaataagaaatagtagtatagtagcagctatttattttt--catgtacagggaagtatatatacatagt |
36207541 |
T |
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| Q |
114 |
ttatatgctagcataattgaagttgcatttgtatatgatattattataatattagaaagagtggttaatttgttttgttagctagatttgctcttgttgt |
213 |
Q |
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| T |
36207542 |
ttatatgctagcataattgaagttgcatttgtatatgatattattataatattagaaagagtggttaatttgtttcgttagctagatttgctcttgttgt |
36207641 |
T |
|
| Q |
214 |
atagagataaaaagattttgtggttatgga---ataaaaccatgcatatgtgagtttgagtttgttactagtgtttagttttaccatatatacattttct |
310 |
Q |
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| T |
36207642 |
atagagataaaaagattttgtggttatggaagtataaaaccatgcatatgtgagtttgagtttgttactagtgtttagttttactgtatatacattttct |
36207741 |
T |
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| Q |
311 |
ttgaatggaaagaagcttcctgttccattgaaacttgcaccaaattttgaagaaaccagttatagtatgatttatatcatcaataatttgatgcttcagt |
410 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||| |||||| || |
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| T |
36207742 |
ttgaatggaaagaagcttcctgttccattgaaacttgcaccaaattttgaagaaaccag-tatagtatga-ttatatcatcaataatttactgcttctgt |
36207839 |
T |
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| Q |
411 |
ggatcaacttcaaagatggatctccatcataatttataccatatcaatat |
460 |
Q |
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| T |
36207840 |
ggatcaacttcaaagatggatctccatcataatttataccatatcaatat |
36207889 |
T |
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