View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1836_low_3 (Length: 768)

Name: NF1836_low_3
Description: NF1836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1836_low_3
NF1836_low_3
[»] scaffold0037 (7 HSPs)
scaffold0037 (205-316)||(104676-104787)
scaffold0037 (98-181)||(104939-105022)
scaffold0037 (464-522)||(104162-104220)
scaffold0037 (229-316)||(30236-30323)
scaffold0037 (102-190)||(29981-30070)
scaffold0037 (312-355)||(30964-31007)
scaffold0037 (459-496)||(31254-31291)
[»] chr6 (4 HSPs)
chr6 (102-190)||(14200380-14200469)
chr6 (464-522)||(14199837-14199895)
chr6 (205-271)||(14200172-14200238)
chr6 (414-457)||(14200127-14200170)


Alignment Details
Target: scaffold0037 (Bit Score: 88; Significance: 7e-42; HSPs: 7)
Name: scaffold0037
Description:

Target: scaffold0037; HSP #1
Raw Score: 88; E-Value: 7e-42
Query Start/End: Original strand, 205 - 316
Target Start/End: Complemental strand, 104787 - 104676
Alignment:
Q  205 tacaaaagcagcaaagcaacacaaagaagagatgttttaacaaaagaaaaaatgcaacagttgtcaatgtcacgcaagatgttggaacataaatttacca 304  Q
    |||||||||||||||||||||||||||  ||||||||||||||||| |||||||||||||||||||||| ||||||||||||||| ||||||||||||||    
T  104787 tacaaaagcagcaaagcaacacaaagacaagatgttttaacaaaagcaaaaatgcaacagttgtcaatgacacgcaagatgttgggacataaatttacca 104688  T
Q  305 gtttcttaattt 316  Q
    ||||| ||||||    
T  104687 gtttcctaattt 104676  T

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Target: scaffold0037; HSP #2
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 98 - 181
Target Start/End: Complemental strand, 105022 - 104939
Alignment:
Q  98 gccgacaccgtgcagttcagtaacataggtccaagtctaagttaagtattcagaagaaaggtgttgcaaacttcccgacctttt 181  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||  ||||| | ||||||||||||  ||||||||    
T  105022 gccgacaccgtgcagttcagtaacataggtccaagtctcagttaagtattcacgagaaaagcgttgcaaacttcttgacctttt 104939  T

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Target: scaffold0037; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 464 - 522
Target Start/End: Complemental strand, 104220 - 104162
Alignment:
Q  464 tcaagagtctgctaaaatcctaacatattcactgctaaaatccaaatacattatccctt 522  Q
    ||||||||||||||||||||||||||||| |||||||||||||  ||||||||||||||    
T  104220 tcaagagtctgctaaaatcctaacatatttactgctaaaatccttatacattatccctt 104162  T

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Target: scaffold0037; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 229 - 316
Target Start/End: Original strand, 30236 - 30323
Alignment:
Q  229 agaagagatgttttaacaaaagaaaaaatgcaacagttgtcaatgtcacgcaagatgttggaacataaatttaccagtttcttaattt 316  Q
    |||| |||||||||||| |||| |||||||||||| || |||||| ||||||| ||||| | |||||||||| | |||||||||||||    
T  30236 agaaaagatgttttaaccaaagcaaaaatgcaacacttatcaatgacacgcaatatgttcggacataaatttgcaagtttcttaattt 30323  T

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Target: scaffold0037; HSP #5
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 102 - 190
Target Start/End: Original strand, 29981 - 30070
Alignment:
Q  102 acaccgtgcagttcagtaacataggtccaagtctaagttaagtattcagaagaaaggtgttgcaaacttcccgacctttt-acttgaaga 190  Q
    |||| |||||||||||||||||| |||||||||   | ||||||||||  ||||||| ||||||||||| | |||||||| |||||||||    
T  29981 acactgtgcagttcagtaacataagtccaagtcccggctaagtattcacgagaaaggcgttgcaaactttctgaccttttcacttgaaga 30070  T

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Target: scaffold0037; HSP #6
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 312 - 355
Target Start/End: Original strand, 30964 - 31007
Alignment:
Q  312 aatttctatgatatactcctgtatgattgttgtaataaaagtga 355  Q
    |||||||||||||||||| ||||||||| |||||||||||||||    
T  30964 aatttctatgatatactcgtgtatgattcttgtaataaaagtga 31007  T

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Target: scaffold0037; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 459 - 496
Target Start/End: Original strand, 31254 - 31291
Alignment:
Q  459 acaattcaagagtctgctaaaatcctaacatattcact 496  Q
    |||| |||||||||||||||||||||||||||||||||    
T  31254 acaaatcaagagtctgctaaaatcctaacatattcact 31291  T

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Target: chr6 (Bit Score: 70; Significance: 4e-31; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 102 - 190
Target Start/End: Complemental strand, 14200469 - 14200380
Alignment:
Q  102 acaccgtgcagttcagtaacataggtccaagtctaagttaagtattcagaagaaaggtgttgcaaacttcccgacctttt-acttgaaga 190  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||  |||||||||||||||||||||||||||||| |||||||||    
T  14200469 acaccgtgcagttcagtaacataggtccaagtctcagttaagtattcacgagaaaggtgttgcaaacttcccgaccttttcacttgaaga 14200380  T

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Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 464 - 522
Target Start/End: Complemental strand, 14199895 - 14199837
Alignment:
Q  464 tcaagagtctgctaaaatcctaacatattcactgctaaaatccaaatacattatccctt 522  Q
    |||||||||| ||||||| ||||||||||||| |||||||||| |||||||||||||||    
T  14199895 tcaagagtctactaaaattctaacatattcacggctaaaatcctaatacattatccctt 14199837  T

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Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 205 - 271
Target Start/End: Complemental strand, 14200238 - 14200172
Alignment:
Q  205 tacaaaagcagcaaagcaacacaaagaagagatgttttaacaaaagaaaaaatgcaacagttgtcaa 271  Q
    ||||||||||||||||| |||||||||| | ||||||||||||||| ||||||| ||| ||||||||    
T  14200238 tacaaaagcagcaaagccacacaaagaaaatatgttttaacaaaagcaaaaatgaaaccgttgtcaa 14200172  T

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Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 414 - 457
Target Start/End: Complemental strand, 14200170 - 14200127
Alignment:
Q  414 gacactaatattgttagatattgacagagtttctaaattaatct 457  Q
    |||||| ||||||||||||||| |||||||||||||||||||||    
T  14200170 gacactcatattgttagatatttacagagtttctaaattaatct 14200127  T

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