View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1836_low_33 (Length: 464)
Name: NF1836_low_33
Description: NF1836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1836_low_33 |
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Alignment Details
Target: chr8 (Bit Score: 301; Significance: 1e-169; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 11 - 403
Target Start/End: Complemental strand, 10919172 - 10918780
Alignment:
| Q |
11 |
atcatcaaacaccaatcatgagccaaaatttctccatcaaccccaaattattcaccacaatcatattcatttccttttctagttttttcctttgcaatga |
110 |
Q |
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| T |
10919172 |
atcatcaaacaccaatcatgagccaaaatttctgtatcaaccccaaattattcaccacaatcatattcatttccttttctagttttttcctttgctatga |
10919073 |
T |
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| Q |
111 |
tgaaccctttcatctcatatcactgaacc--ttcatcaaaccattttatcttcatctgatacgtttttcatcaacaccaaaacaaactttcaacacctac |
208 |
Q |
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| T |
10919072 |
tgaaccctttcatctcatatcactgaaccctttcgtcaaaccattttatcttcatctgatacgtttttcatcaacaccaaaacaaactttcaacacctac |
10918973 |
T |
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| Q |
209 |
ttacctagatcagtactggtttggctgaaaatgttagatttggaatacatattggtctcaggaccgtaatattttctttccttttgttttcatctctaaa |
308 |
Q |
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|| ||||||| ||| ||||||||||||||||| ||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
10918972 |
ttgtctagatcggtattggtttggctgaaaatggtagct--ggaatacatattggtctcaggaccgtaatattttctttccttttgttttcatccctaaa |
10918875 |
T |
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| Q |
309 |
tcgtgcattctaaaaagatcaatcatctttgtcgatggatttttccagaaacatcatggttgcagtgagtaaaatacatggatttaaaaaatatc |
403 |
Q |
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| T |
10918874 |
tcgtgcattctaagaaggtcaatcgtctttgtcgatgggtttttccagaaacattatggctgccgtgagtaaaatacatggatttaaaaaatatc |
10918780 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 11 - 377
Target Start/End: Complemental strand, 43958919 - 43958553
Alignment:
| Q |
11 |
atcatcaaacaccaatcatgagccaaaatttctccatcaaccccaaattattcaccacaatcatattcatttccttttctagttttttcctttgcaatga |
110 |
Q |
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||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
43958919 |
atcatcaaacaccgatcatgagccaaaatttctgcatcaaccccaaattattcaccacaattatattcatttccttttctagttttttcctttgcaatga |
43958820 |
T |
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| Q |
111 |
tgaaccctttcatctcatatcactgaacc--ttcatcaaaccattttatcttcatctgatacgtttttcatcaacaccaaaacaaactttcaacacctac |
208 |
Q |
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|||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
43958819 |
tgaaccctttcatctcatatcacttaaccctttcatcaaaccattttatcttcatctgataggtttttcatcaacaccaaaacaaactttcaacacctac |
43958720 |
T |
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| Q |
209 |
ttacctagatcagtactggtttggctgaaaatgttagatttggaatacatattggtctcaggaccgtaatattttctttccttttgttttcatctctaaa |
308 |
Q |
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|| |||||||| ||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
43958719 |
ttgcctagatcggtactggtttggctgaaaatggtag--ctggaatacatattggtctcaggaccgtaatattttctttccttttgttttcatccctaaa |
43958622 |
T |
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| Q |
309 |
tcgtgcattctaaaaagatcaatcatctttgtcgatggatttttccagaaacatcatggttgcagtgag |
377 |
Q |
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| T |
43958621 |
tcgtgaattctaagaaggtcaatcgtctttgtcgatgggtttttccagaaacatcatggctgcagtgag |
43958553 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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