View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1836_low_35 (Length: 460)
Name: NF1836_low_35
Description: NF1836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1836_low_35 |
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Alignment Details
Target: chr7 (Bit Score: 364; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 20 - 443
Target Start/End: Complemental strand, 35054143 - 35053719
Alignment:
| Q |
20 |
tatatacgtaaatattttatcaatatttcaataattttaattacctcccctnnnnnnnnnnn-tcaccgactttaaacatatcaaatcatttgctggaat |
118 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
35054143 |
tatatacgtaaatattttatcaatatttcaataattttaattacctcccctaaaaaaaaaaaatcaccgactttaaacatatcaaatcatttgctggaat |
35054044 |
T |
|
| Q |
119 |
tattaaaataaccttgacaaacttcatgtggttgaaaattgaaatcacgaattgatagctagatgagacgataattgaaacacttgatgctaactgctat |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
35054043 |
tattaaaataaccttgacaaacttcatgtggttgaaaattgaaatcacgaattgatagttagatgagacgataattgaaacacttgatgctaactgctat |
35053944 |
T |
|
| Q |
219 |
aaataactcataagaatattctactaaagacggatatagagtacaatgtgcatgttctctaaagatcaggaactatcacacatgccctatatattatctt |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
35053943 |
aaataactcataagaatattctactaaagacggatatagagtccaatgtgcatgttctctaaagattaggaactatcacacatgccctatatattatctt |
35053844 |
T |
|
| Q |
319 |
ctgtcactcaaataaataaaagtttacatgttgaactcttggggcacggagataattccattaacattcgatgctttgtgtttgtatatgtgaatttggg |
418 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||| |
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| T |
35053843 |
ctgtcactcaaataaataaaagtttacatgttgaactcttggggcacggagataattccattaccattcgatgctttgtgtttgtatctgtgaatttggg |
35053744 |
T |
|
| Q |
419 |
aatctgaatggtcatgacgctaagt |
443 |
Q |
| |
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| T |
35053743 |
aatctgaatggtcatgacgctaagt |
35053719 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 20 - 443
Target Start/End: Original strand, 34354947 - 34355349
Alignment:
| Q |
20 |
tatatacgtaaatattttatcaatatttcaataattttaattacctcccctnnnnnnnnnnn--tcaccgactttaaacatatcaaatcatttgctggaa |
117 |
Q |
| |
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|||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||| |
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| T |
34354947 |
tatatacgtaaatattttctcaatatttcaataattttaattacctcccctaaaaaaaaattaatcaccgactttaaacatatcaaatcatttgctagaa |
34355046 |
T |
|
| Q |
118 |
ttattaaaataaccttgacaaacttcatgtggttgaaaattgaaatcacgaattgatagctagatgagacgataattgaaacacttgatgctaactgcta |
217 |
Q |
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||||||||||||||||||||| |||||| |||||||||||| |||||||||||||||||||||||| ||||| |
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| T |
34355047 |
ttattaaaataaccttgacaat---------------------aatcacaaattgatagctaaatgagacgataattgaaacacttg-------ctgctg |
34355118 |
T |
|
| Q |
218 |
taaataactcataagaatattctacta-aagacggatata------gagtacaatgtgcatgttctctaaagatcaggaactat--cacacatgccctat |
308 |
Q |
| |
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||||||||||| |||| ||||| |||| || ||| ||||| ||||||||||| ||||||||||||||| ||||||||| ||||||||||||| |
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| T |
34355119 |
taaataactcacaagattattcaactacaaaacgaatataattatagagtacaatgtagatgttctctaaagattaggaactattacacacatgccctac |
34355218 |
T |
|
| Q |
309 |
atattatcttctgtcactcaaataaataaaagtttacatgttgaactcttggggcacggagataattccattaacattcgatgctttgtgtttgtatatg |
408 |
Q |
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||||||||| ||||||||||||| |||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||| |||||||| | |
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|
| T |
34355219 |
atattatctgctgtcactcaaat----aaaagtttacatgttgaactcttgggacacgaagataattccattaacattcgatgctttgcgtttgtatcag |
34355314 |
T |
|
| Q |
409 |
tgaatttgggaatctgaatggtcatgacgctaagt |
443 |
Q |
| |
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| |||| |||| ||||||||||||||||||||||| |
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|
| T |
34355315 |
taaattcgggactctgaatggtcatgacgctaagt |
34355349 |
T |
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