View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1836_low_36 (Length: 460)
Name: NF1836_low_36
Description: NF1836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1836_low_36 |
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Alignment Details
Target: chr3 (Bit Score: 408; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 18 - 449
Target Start/End: Original strand, 1729447 - 1729878
Alignment:
| Q |
18 |
tatgatgagtgtaaaactactttgctgattcaatttgagcaataagagttactatcaacaacaaagtactaactttagctaaaaaatacttgcataaagc |
117 |
Q |
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| T |
1729447 |
tatgatgagtgtaaaactactttgttggttcaatttgagcaataagagttactatcaacaacaaagtactaactttagctaaaaaatacttgcataaagc |
1729546 |
T |
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| Q |
118 |
ttaacaactttagctaaaaaatcacaacaaagtaactaacttttaaagctaattttcaatacaagttactatcaacaactatgaattattgaactttatt |
217 |
Q |
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| T |
1729547 |
ttaacaactttagctaaaaaatcacaacaaagtaactaacttttaaagctaattttcaatccaagttactatcaacaactatgaattattgaactttatt |
1729646 |
T |
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| Q |
218 |
aaatccaaacacagtgcactaatttaaatgataaatgaagggctatgctatctgaaaattgtatgtttaagtttgatccaaaccagatttttcgtgcata |
317 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||| |
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| T |
1729647 |
aaatccaaacacagcgcactaatttaaatgataaatgaagggctatgctatctgaaaattgaatgtttaagtttgatccaaaccagatttttcttgcata |
1729746 |
T |
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| Q |
318 |
atgacaatccataaggatatggtaactaactttctcaatattgttgtagactctacgacataactaattagtagttaaacccctttggtttagttcactt |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1729747 |
atgacaatccataaggatatggtaactaactttctcaatattgttgtagactctacgacataactaattagtagttaaacccctttggtttagttcactt |
1729846 |
T |
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| Q |
418 |
ctcaataaaccccctgtaagtgaatcattcat |
449 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
1729847 |
ctcaataaaccccctgtaagtgaatcattcat |
1729878 |
T |
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