View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1836_low_38 (Length: 444)
Name: NF1836_low_38
Description: NF1836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1836_low_38 |
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| [»] scaffold0272 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 333; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 18 - 358
Target Start/End: Complemental strand, 34800226 - 34799887
Alignment:
| Q |
18 |
gatttggcatgccgcggtgtggagtatttggagggtgcgaaatgatcgtatctttaataatgttacttgtggagctgcggagttagtggaggcgattaag |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34800226 |
gatttggcatgccgcggtgtggagtatttggagggtgcgaaatgatcgtatctttaataatgttacttgtggagctgcggagttagtggaggcgattaag |
34800127 |
T |
|
| Q |
118 |
gttttgtagtggagatggatgttgagtcgtttgaaggtaccggttttatgaatggtgttggtgtcctagagagtgtcttatgcgttaatggggctggttc |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34800126 |
gttttgtagtggagatggatgttgagtcgtttgaaggtaccggttttatgaatggtgttggtgtcctagagagtgtcttatgcgttaatggggctggttc |
34800027 |
T |
|
| Q |
218 |
agtttagtggagtttgaggctgggggtatgtggttttttgctgattgcggttcgttgttttggtgctgctgtattgctgttcggcatatgttagcctcat |
317 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34800026 |
agtttagtggagtttgaggct-ggggtatgtggttttttgctgattgcggttcgttgttttggtgctgctgtattgctgttcggcatatgttagcctcat |
34799928 |
T |
|
| Q |
318 |
gtgtttgctgctgcccggttcctgtttctgcgatgacagca |
358 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |
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| T |
34799927 |
gtgtttgctgctgcccggttcctgtttctgcgatgacagca |
34799887 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 18 - 242
Target Start/End: Original strand, 11888912 - 11889135
Alignment:
| Q |
18 |
gatttggcatgccgcggtgtggagtatttggagggtgcgaaatgatcgtatctttaataatgttacttgtggagctgcggagttagtggaggcgattaag |
117 |
Q |
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| T |
11888912 |
gatttggcatcccgcggtttggagtatttggagggcgagaaatgat-gcatttttaacaatttaatttgtgg------gga--tagtggaggcgattaag |
11889002 |
T |
|
| Q |
118 |
gttttgtagtggagatggatgttgagtcgtttgaaggtacc--------ggttttatgaatggtgttggtgtcctagagagtgtcttatgcgttaatggg |
209 |
Q |
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||||||| |||||| |||||||||||||||||||||||||| ||||||||||| ||||||||| | ||||||||||| |||| |||||||| |
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| T |
11889003 |
gttttgtcgtggaggtggatgttgagtcgtttgaaggtaccagcgagtttgttttatgaatagtgttggtgcctaagagagtgtctcatgctttaatggg |
11889102 |
T |
|
| Q |
210 |
gctggttcagtttagtggagtttgaggctgggg |
242 |
Q |
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|||| ||| || | | |||| |||||||||||| |
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| T |
11889103 |
gctgtttcggtatcgcggaggttgaggctgggg |
11889135 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 91; Significance: 6e-44; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 37 - 270
Target Start/End: Original strand, 1611576 - 1611815
Alignment:
| Q |
37 |
tggagtatttggagggtgcgaaatgatcgtatctttaataatgttacttgtggagctgcggagttagtggaggcgattaaggttttgtagtggagatgga |
136 |
Q |
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|||||||||||||||||| | |||||||| || ||||||||||| | |||||| || ||||||||||||||||||||||||||||||| |||||| || | |
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| T |
1611576 |
tggagtatttggagggtgaggaatgatcgcatttttaataatgtaatttgtggggcggcggagttagtggaggcgattaaggttttgttgtggaggtgca |
1611675 |
T |
|
| Q |
137 |
tgttgagtcgtttgaaggtaccgg-------ttttatgaatggtgttggtgtcctagagagtgtcttatgcgttaatggggctggttcagtttagtggag |
229 |
Q |
| |
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|||||||||||||||| || |||| |||| |||||||||| ||||||||| |||||||||| | ||||||||| ||| ||| || || |||| |
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| T |
1611676 |
tgttgagtcgtttgaacgtgccggcgagtttgtttacgaatggtgttcgtgtcctagcgagtgtcttaggtgttaatgggactgtttcggtacagcggag |
1611775 |
T |
|
| Q |
230 |
tttgaggctgggggtatgtggttttttgctgattgcggttc |
270 |
Q |
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|||||||| |||||||||||| |||||||| |||||||| |
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| T |
1611776 |
gttgaggct-ggggtatgtggtgttttgctgtatgcggttc |
1611815 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 18 - 149
Target Start/End: Original strand, 13725865 - 13725996
Alignment:
| Q |
18 |
gatttggcatgccgcggtgtggagtatttggagggtgcgaaatgatcgtatctttaataatgttacttgtggagctgcggagttagtggaggcgattaag |
117 |
Q |
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||||||||| |||||||| |||||| | ||||||| | |||||||||| || || |||||| || ||||| | ||| ||| |||||||||| |||||| |
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| T |
13725865 |
gatttggcacgccgcggtttggagtttatggagggcgagaaatgatcgaattttcaataattctaattgtgatgttgctgagatagtggaggcaattaag |
13725964 |
T |
|
| Q |
118 |
gttttgtagtggagatggatgttgagtcgttt |
149 |
Q |
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||||| |||||| |||| ||||||||||| |
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| T |
13725965 |
gtttttccgtggaggtggactttgagtcgttt |
13725996 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 103 - 147
Target Start/End: Original strand, 5038065 - 5038109
Alignment:
| Q |
103 |
gtggaggcgattaaggttttgtagtggagatggatgttgagtcgt |
147 |
Q |
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| T |
5038065 |
gtggaggcgattaaggttttatcgtggagatgggtgttgagtcgt |
5038109 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 18 - 62
Target Start/End: Original strand, 26728811 - 26728855
Alignment:
| Q |
18 |
gatttggcatgccgcggtgtggagtatttggagggtgcgaaatga |
62 |
Q |
| |
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|||||||||||||| |||||||||||| ||||||| | ||||||| |
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| T |
26728811 |
gatttggcatgccgtggtgtggagtatatggagggcgagaaatga |
26728855 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 18 - 206
Target Start/End: Original strand, 15858454 - 15858650
Alignment:
| Q |
18 |
gatttggcatgccgcggtgtggagtatttggagggtgcgaaatgatcgtatctttaataatgttacttgtggagctgcggagttagtggaggcgattaag |
117 |
Q |
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|||||||||||| ||||| |||||||||||||||||| |||| || ||||| ||||| ||| | ||||| || | |||||||||||||||||| ||| |
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| T |
15858454 |
gatttggcatgctgcggtttggagtatttggagggtgagaaacgaccgtatttttaacggtgtaaattgtgaagtggtggagttagtggaggcgatcaag |
15858553 |
T |
|
| Q |
118 |
gttttgtagtggagatggatgttgagtcgtttgaaggtaccg--------gttttatgaatggtgttggtgtcctagagagtgtcttatgcgttaat |
206 |
Q |
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||| ||| ||||||||||||||| || |||||||| | ||| || ||||||||||||||||||||| |||||||| ||||| ||||||| |
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| T |
15858554 |
gttctgtcgtggagatggatgttaagccgtttgaaagggccggcgtgtttgtattatgaatggtgttggtgtccgagagagtgccttattcgttaat |
15858650 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0272 (Bit Score: 49; Significance: 7e-19; HSPs: 1)
Name: scaffold0272
Description:
Target: scaffold0272; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 18 - 146
Target Start/End: Original strand, 2493 - 2621
Alignment:
| Q |
18 |
gatttggcatgccgcggtgtggagtatttggagggtgcgaaatgatcgtatctttaataatgttacttgtggagctgcggagttagtggaggcgattaag |
117 |
Q |
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||||||||| |||||||| |||||||||||||||||| |||||||||| ||||||| ||| | |||||| | | |||| | || |||||||||||| |
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| T |
2493 |
gatttggcacgccgcggtttggagtatttggagggtgagaaatgatcgcatctttacaaatacaatttgtggggtagtggaggtggtagaggcgattaag |
2592 |
T |
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| Q |
118 |
gttttgtagtggagatggatgttgagtcg |
146 |
Q |
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| T |
2593 |
gttttatcgtggagatgggtgttgagtcg |
2621 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 18 - 149
Target Start/End: Complemental strand, 10909564 - 10909433
Alignment:
| Q |
18 |
gatttggcatgccgcggtgtggagtatttggagggtgcgaaatgatcgtatctttaataatgttacttgtggagctgcggagttagtggaggcgattaag |
117 |
Q |
| |
|
||||||||| |||||||| |||||| | ||||||||| |||||||||| || || |||||| || ||||| | ||| ||| || |||||||||||||| |
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| T |
10909564 |
gatttggcacgccgcggtttggagtttatggagggtgagaaatgatcgaattttcaataattctaattgtgatgttgctgagatattggaggcgattaag |
10909465 |
T |
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| Q |
118 |
gttttgtagtggagatggatgttgagtcgttt |
149 |
Q |
| |
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||||||| |||||| |||| ||||||||||| |
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| T |
10909464 |
gttttgtcgtggaggtggactttgagtcgttt |
10909433 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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