View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1836_low_42 (Length: 427)
Name: NF1836_low_42
Description: NF1836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1836_low_42 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 361; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 16 - 416
Target Start/End: Original strand, 2608275 - 2608675
Alignment:
| Q |
16 |
atttctcttcccacacaacaatctcacccctaattcacttggcatctcatcaaccaaacaccatttatccccttcactcatttcccaaacacaaacattt |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2608275 |
atttctcttcccacacaacaatctcacccctaattcacttggcatctcatcaaccaaacaccatttatccccttcactcatttcccaaacacaaacattt |
2608374 |
T |
|
| Q |
116 |
ccaccacacgtgccaccaatcaatcccaaccctccattccatctcacaagtgttgcaaattcaagcctatccgcaagaggtacactaaattctctccaac |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| ||||||||||| ||||||| |
|
|
| T |
2608375 |
ccaccacacgtgccaccaatcaatcccaaccctccattccatctcacaagtgtagcaaattcaagcctatctgcaagaggcacactaaattccctccaac |
2608474 |
T |
|
| Q |
216 |
aattattcccaacatcaaatcccatcacattatatgccctagccgaggtaatccaatacaacgttgttgttcttcttccctctatacacacattctcatt |
315 |
Q |
| |
|
||||||||||||||||||||||||| ||| ||||||||||||| ||||| ||||||||||| |||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
2608475 |
aattattcccaacatcaaatcccattacactatatgccctagctgaggttatccaatacaatgttgttgttcttgttccctctatacacacattctcatt |
2608574 |
T |
|
| Q |
316 |
tggtgtccaaaccgttagcctaaccgaaaattcaaccggcatcgatccaacgattttccacgtgtcaatacaagattcatatatttcaacggtcggttca |
415 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2608575 |
tggtgtccaaaccgttagcctaaccgaaaattcaaccggcatcgatccaacgattttccacgtgtcaatacaagattcatatatttcaacggtcggttca |
2608674 |
T |
|
| Q |
416 |
t |
416 |
Q |
| |
|
| |
|
|
| T |
2608675 |
t |
2608675 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University