View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1836_low_43 (Length: 425)

Name: NF1836_low_43
Description: NF1836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1836_low_43
NF1836_low_43
[»] chr3 (16 HSPs)
chr3 (15-412)||(50911941-50912334)
chr3 (15-260)||(38024947-38025192)
chr3 (15-261)||(38031399-38031645)
chr3 (15-261)||(55084606-55084854)
chr3 (15-211)||(38028838-38029034)
chr3 (15-193)||(50909850-50910028)
chr3 (15-211)||(38040153-38040349)
chr3 (15-178)||(38036865-38037028)
chr3 (15-107)||(38033851-38033943)
chr3 (292-359)||(38029173-38029240)
chr3 (15-105)||(50904864-50904954)
chr3 (290-343)||(38025277-38025330)
chr3 (15-143)||(38043843-38043971)
chr3 (15-104)||(48840783-48840872)
chr3 (292-359)||(55084451-55084518)
chr3 (297-346)||(38037206-38037255)
[»] chr8 (3 HSPs)
chr8 (15-269)||(21607368-21607622)
chr8 (15-211)||(21604826-21605022)
chr8 (292-359)||(21605164-21605231)
[»] chr4 (17 HSPs)
chr4 (15-105)||(17970277-17970367)
chr4 (15-127)||(27557445-27557557)
chr4 (15-104)||(27502879-27502968)
chr4 (25-101)||(27498397-27498473)
chr4 (15-106)||(27431220-27431311)
chr4 (44-99)||(27527145-27527200)
chr4 (15-117)||(27425778-27425880)
chr4 (15-104)||(27444866-27444955)
chr4 (47-127)||(27554265-27554345)
chr4 (15-102)||(27414376-27414463)
chr4 (15-114)||(27570121-27570220)
chr4 (25-99)||(27501301-27501375)
chr4 (25-114)||(27415593-27415679)
chr4 (25-102)||(27513858-27513935)
chr4 (25-114)||(27566033-27566122)
chr4 (47-99)||(27446131-27446183)
chr4 (15-99)||(27556451-27556535)
[»] chr2 (1 HSPs)
chr2 (15-105)||(3073547-3073637)
[»] chr5 (2 HSPs)
chr5 (15-100)||(1754313-1754398)
chr5 (25-104)||(1756839-1756918)


Alignment Details
Target: chr3 (Bit Score: 369; Significance: 0; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 15 - 412
Target Start/End: Original strand, 50911941 - 50912334
Alignment:
Q  15 gaaatgaagcttggttcaagtatgacttggggatcacaaaccgtttcatcttgtctccaacatataccgcaagatagccctttggcacattcacaacttt 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50911941 gaaatgaagcttggttcaagtatgacttggggatcacaaaccgtttcatcttgtctccaacatataccgcaagatagccctttggcacattcacaacttt 50912040  T
Q  115 cgatgatgcttggctacctgtaaatgaagttcgtctaatggcaggtaaacggaaacccatttcaaatattttgaagaaaaaactgaatttatcagatttc 214  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  50912041 tgatgatgcttggctacctgtaaatgaagttcgtctaatggcaggtaaacggaaacccatttcaaatattttgaagaaaaaactgaatttctcagatttc 50912140  T
Q  215 agcaaaatctttctatatttgtttgctcgagtgatttgtgaagttgtaaaggagggacagtgtctttgatggcacatgacacgagatcacatggtattgt 314  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50912141 agcaaaatctttctatatttgtttgctcgagtgatttgtgaagttgtaaaggagggacagtgtctttgatggcacatgacacgagatcacatggtattgt 50912240  T
Q  315 ctttgattcctctgtcaaggatcaataagttcaataggagcgcaatatgaatggccgatagagtacccacccgctatatatcaatgcctactcatttc 412  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    ||||||||||||||||||||||||||||||    
T  50912241 ctttgatgcctctgtcaaggatcaataagttcaataggagcgcaatatgaatggccgatagagt----acccgctatatatcaatgcctactcatttc 50912334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 15 - 260
Target Start/End: Original strand, 38024947 - 38025192
Alignment:
Q  15 gaaatgaagcttggttcaagtatgacttggggatcacaaaccgtttcatcttgtctccaacatataccgcaagatagccctttggcacattcacaacttt 114  Q
    |||| ||||||||||||||||||||| ||||||| |||||||| ||||| |  |||||||||||||| ||||||||||||||||| ||||||||| ||||    
T  38024947 gaaaggaagcttggttcaagtatgacatggggataacaaaccgcttcatttgctctccaacatatactgcaagatagccctttggtacattcacagcttt 38025046  T
Q  115 cgatgatgcttggctacctgtaaatgaagttcgtctaatggcaggtaaacggaaacccatttcaaatattttgaagaaaaaactgaatttatcagatttc 214  Q
     |||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||     
T  38025047 tgatgatgcttggctacttgtaaatgaagttcgtctaatagcaggtaaacggaaacccatttcaaatgttttgaagaaaaaactgaatttctcagattta 38025146  T
Q  215 agcaaaatctttctatatttgtttgctcgagtgatttgtgaagttg 260  Q
    || ||||| |||||| ||||||||||| || |||||||||||||||    
T  38025147 agaaaaatgtttctaaatttgtttgcttgaatgatttgtgaagttg 38025192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 151; E-Value: 9e-80
Query Start/End: Original strand, 15 - 261
Target Start/End: Original strand, 38031399 - 38031645
Alignment:
Q  15 gaaatgaagcttggttcaagtatgacttggggatcacaaaccgtttcatcttgtctccaacatataccgcaagatagccctttggcacattcacaacttt 114  Q
    |||| ||||||||||||||||||||| ||||||| |||||||| ||||| |  |||||||||||||| ||||||||||||||||| ||||||||| ||||    
T  38031399 gaaaggaagcttggttcaagtatgacatggggataacaaaccgcttcatttgctctccaacatatactgcaagatagccctttggtacattcacagcttt 38031498  T
Q  115 cgatgatgcttggctacctgtaaatgaagttcgtctaatggcaggtaaacggaaacccatttcaaatattttgaagaaaaaactgaatttatcagatttc 214  Q
     |||||||||||||||| ||||||||||||||||||||| ||||||||| ||||||||||||||||| |||||| ||||||||||||||| || |||||     
T  38031499 tgatgatgcttggctacttgtaaatgaagttcgtctaatagcaggtaaatggaaacccatttcaaatgttttgatgaaaaaactgaatttctctgattta 38031598  T
Q  215 agcaaaatctttctatatttgtttgctcgagtgatttgtgaagttgt 261  Q
    || ||||| |||||| ||||||||||| || ||||||||||||||||    
T  38031599 agaaaaatgtttctaaatttgtttgcttgaatgatttgtgaagttgt 38031645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 15 - 261
Target Start/End: Complemental strand, 55084854 - 55084606
Alignment:
Q  15 gaaatgaagcttggttcaagtatgacttggggatcacaaaccgtttcatcttgtctccaacatataccgcaagatagccctttggcacattcacaacttt 114  Q
    ||||||| | |||||||||||| ||| | |||||||||||||| ||||| || ||||||||||| || |||||| | || |||||||||||||||  |||    
T  55084854 gaaatgatggttggttcaagtaagacatagggatcacaaaccgcttcattttctctccaacatacactgcaagacacccttttggcacattcacagattt 55084755  T
Q  115 cgatgatgcttggctacctgtaaatgaagttcgtctaat---ggcaggtaaacggaaacccatttcaaatattttgaagaaaaaactgaatttatcagat 211  Q
     ||||||| ||||||||| ||||||||||| | ||||||    ||||||||||||||| ||||||||||| ||||||| || || |||||||||||||||    
T  55084754 tgatgatgtttggctacccgtaaatgaagtccttctaatagctgcaggtaaacggaaa-ccatttcaaatgttttgaataacaagctgaatttatcagat 55084656  T
Q  212 ttcagcaaaatctttctatatttgtttgctcgagtgatttgtgaagttgt 261  Q
    || || ||||  | |||| ||||||||||  |||| ||||||||||||||    
T  55084655 ttaagaaaaaggtatctaaatttgtttgcctgagtaatttgtgaagttgt 55084606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 15 - 211
Target Start/End: Original strand, 38028838 - 38029034
Alignment:
Q  15 gaaatgaagcttggttcaagtatgacttggggatcacaaaccgtttcatcttgtctccaacatataccgcaagatagccctttggcacattcacaacttt 114  Q
    |||||||||||||||||||||||||| ||||||| ||||| || ||||| |  |||||||| || || |||||||||||||||||||||||||  |||||    
T  38028838 gaaatgaagcttggttcaagtatgacgtggggataacaaatcgcttcatttgctctccaacgtacactgcaagatagccctttggcacattcaatacttt 38028937  T
Q  115 cgatgatgcttggctacctgtaaatgaagttcgtctaat---ggcaggtaaacggaaacccatttcaaatattttgaagaaaaaactgaatttatcagat 211  Q
       ||||| ||||||||   | |||||||  ||||||||    ||||||||||||||||||||||||||| |||||||||| ||  ||||||| ||||||    
T  38028938 ---tgatgtttggctactgctgaatgaagcccgtctaatagctgcaggtaaacggaaacccatttcaaatgttttgaagaacaagatgaatttctcagat 38029034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 15 - 193
Target Start/End: Complemental strand, 50910028 - 50909850
Alignment:
Q  15 gaaatgaagcttggttcaagtatgacttggggatcacaaaccgtttcatcttgtctccaacatataccgcaagatagccctttggcacattcacaacttt 114  Q
    |||||||||||||||||||||||||| ||||||| ||||||||   ||| |  ||||||||||| || |||||||| ||||||||||||||||  |||||    
T  50910028 gaaatgaagcttggttcaagtatgacatggggataacaaaccgcagcatttgctctccaacatacactgcaagataaccctttggcacattcaatacttt 50909929  T
Q  115 cgatgatgcttggctacctgtaaatgaagttcgtctaat---ggcaggtaaacggaaacccatttcaaatattttgaagaaa 193  Q
       ||||| ||||||||   ||||||||| |||||||||    || |||||||||||||||||||||||| |||||||||||    
T  50909928 ---tgatgtttggctactgctaaatgaagctcgtctaatagctgctggtaaacggaaacccatttcaaatgttttgaagaaa 50909850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 15 - 211
Target Start/End: Original strand, 38040153 - 38040349
Alignment:
Q  15 gaaatgaagcttggttcaagtatgacttggggatcacaaaccgtttcatcttgtctccaacatataccgcaagatagccctttggcacattcacaacttt 114  Q
    |||||||||||||||||||||||||| ||||||| ||||| || ||||| |  |||||||| || || |||||||||||||||||||||||||  |||||    
T  38040153 gaaatgaagcttggttcaagtatgacgtggggataacaaatcgcttcatttgctctccaacgtacactgcaagatagccctttggcacattcaatacttt 38040252  T
Q  115 cgatgatgcttggctacctgtaaatgaagttcgtctaat---ggcaggtaaacggaaacccatttcaaatattttgaagaaaaaactgaatttatcagat 211  Q
       ||||| ||||||||   | |||||||  ||||||||    |||| |||||| ||||||||||||||| |||||| ||| ||  ||||||| ||||||    
T  38040253 ---tgatgtttggctactgctgaatgaagcccgtctaatagctgcagataaacgaaaacccatttcaaatgttttgatgaacaagatgaatttctcagat 38040349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 15 - 178
Target Start/End: Original strand, 38036865 - 38037028
Alignment:
Q  15 gaaatgaagcttggttcaagtatgacttggggatcacaaaccgtttcatcttgtctccaacatataccgcaagatagccctttggcacattcacaacttt 114  Q
    |||||||||||||||||||||||| | ||||||  |||||||||||||| |  |||||||| || || |||||||||||||||||||||||||  |||||    
T  38036865 gaaatgaagcttggttcaagtatggcatggggacaacaaaccgtttcatttgctctccaacgtacactgcaagatagccctttggcacattcaatacttt 38036964  T
Q  115 cgatgatgcttggctacctgtaaatgaagttcgtctaat---ggcaggtaaacggaaacccatttca 178  Q
        |||| ||||||||   |||| ||||  ||||||||    ||||||||||||||||||||||||    
T  38036965 ---ggatgtttggctactgctaaaggaagcccgtctaatagctgcaggtaaacggaaacccatttca 38037028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 15 - 107
Target Start/End: Original strand, 38033851 - 38033943
Alignment:
Q  15 gaaatgaagcttggttcaagtatgacttggggatcacaaaccgtttcatcttgtctccaacatataccgcaagatagccctttggcacattca 107  Q
    |||||||||||||||||||||||||| ||||||| |||||||| ||||| |  |||||||  || || |||||||||||||||||||||||||    
T  38033851 gaaatgaagcttggttcaagtatgacgtggggataacaaaccgcttcatttgctctccaatgtacactgcaagatagccctttggcacattca 38033943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 292 - 359
Target Start/End: Original strand, 38029173 - 38029240
Alignment:
Q  292 gacacgagatcacatggtattgtctttgattcctctgtcaaggatcaataagttcaataggagcgcaa 359  Q
    |||| |||||||||||| |||||||| ||| ||||| |||||||||||||||||||||| ||| ||||    
T  38029173 gacaagagatcacatgggattgtcttagatgcctctatcaaggatcaataagttcaataagagtgcaa 38029240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 15 - 105
Target Start/End: Original strand, 50904864 - 50904954
Alignment:
Q  15 gaaatgaagcttggttcaagtatgacttggggatcacaaaccgtttcatcttgtctccaacatataccgcaagatagccctttggcacatt 105  Q
    ||||||||| |||||||||||| ||| |  ||||||||||||| ||||| |  |||||||| || || |||||||| ||||||||||||||    
T  50904864 gaaatgaagtttggttcaagtaggacatatggatcacaaaccgcttcatttcttctccaacgtacactgcaagatatccctttggcacatt 50904954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 290 - 343
Target Start/End: Original strand, 38025277 - 38025330
Alignment:
Q  290 atgacacgagatcacatggtattgtctttgattcctctgtcaaggatcaataag 343  Q
    |||| ||||||||||||||||||||||| ||| ||||| |||||||||||||||    
T  38025277 atgagacgagatcacatggtattgtcttagatgcctctatcaaggatcaataag 38025330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 15 - 143
Target Start/End: Complemental strand, 38043971 - 38043843
Alignment:
Q  15 gaaatgaagcttggttcaagtatgacttggggatcacaaaccgtttcatcttgtctccaacatataccgcaagatagccctttggcacattcacaacttt 114  Q
    |||| |||| ||| |||||||||||| | |||||||||||||| ||||| |  |||||||  || || |||||||||| ||||||||||||    |||||    
T  38043971 gaaacgaagtttgattcaagtatgacatagggatcacaaaccgcttcatttcctctccaaagtacactgcaagatagctctttggcacatttgtgacttt 38043872  T
Q  115 cgatgatgcttggctacctgtaaatgaag 143  Q
    | |||||| |||||| | | |||||||||    
T  38043871 caatgatgtttggctgcttctaaatgaag 38043843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 15 - 104
Target Start/End: Original strand, 48840783 - 48840872
Alignment:
Q  15 gaaatgaagcttggttcaagtatgacttggggatcacaaaccgtttcatcttgtctccaacatataccgcaagatagccctttggcacat 104  Q
    ||||||| |||||||||||||||| | ||||||| ||||| || |||||||  ||||| || || |  |||||||| |||||||||||||    
T  48840783 gaaatgaggcttggttcaagtatggcatggggattacaaatcgcttcatctcctctccgacgtacaatgcaagatatccctttggcacat 48840872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 292 - 359
Target Start/End: Complemental strand, 55084518 - 55084451
Alignment:
Q  292 gacacgagatcacatggtattgtctttgattcctctgtcaaggatcaataagttcaataggagcgcaa 359  Q
    |||| ||||| ||||||| ||||||| ||| ||||| ||||| |||||||||||||||| ||| ||||    
T  55084518 gacaagagatgacatggtgttgtcttagatgcctctatcaagaatcaataagttcaataagagtgcaa 55084451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 297 - 346
Target Start/End: Original strand, 38037206 - 38037255
Alignment:
Q  297 gagatcacatggtattgtctttgattcctctgtcaaggatcaataagttc 346  Q
    ||||||||||||| ||||||| ||| ||||| | ||||||||||||||||    
T  38037206 gagatcacatggtgttgtcttagatgcctctattaaggatcaataagttc 38037255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 163; Significance: 6e-87; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 163; E-Value: 6e-87
Query Start/End: Original strand, 15 - 269
Target Start/End: Original strand, 21607368 - 21607622
Alignment:
Q  15 gaaatgaagcttggttcaagtatgacttggggatcacaaaccgtttcatcttgtctccaacatataccgcaagatagccctttggcacattcacaacttt 114  Q
    |||| |||||| |||||||||||||| ||||||| |||||||| ||||| |  ||||||||||||||||||||||| |||||||| ||||||||||||||    
T  21607368 gaaaggaagctcggttcaagtatgacatggggataacaaaccgcttcatttgctctccaacatataccgcaagatatccctttggtacattcacaacttt 21607467  T
Q  115 cgatgatgcttggctacctgtaaatgaagttcgtctaatggcaggtaaacggaaacccatttcaaatattttgaagaaaaaactgaatttatcagatttc 214  Q
     |||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||| || |||||     
T  21607468 tgatgatgcttggctacttgtaaatgaagttcgtctaatagcaggtaaacggaaacccatttcaaatgttttgaagaaaaaactgaatttctctgattta 21607567  T
Q  215 agcaaaatctttctatatttgtttgctcgagtgatttgtgaagttgtaaaggagg 269  Q
    || ||||| |||||| ||||||||||| || |||||||||||||||| |||||||    
T  21607568 agaaaaatgtttctaaatttgtttgcttgaatgatttgtgaagttgtgaaggagg 21607622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 15 - 211
Target Start/End: Original strand, 21604826 - 21605022
Alignment:
Q  15 gaaatgaagcttggttcaagtatgacttggggatcacaaaccgtttcatcttgtctccaacatataccgcaagatagccctttggcacattcacaacttt 114  Q
    |||||||||||||||||||||||||| ||||||| ||||| || ||||| |  ||||| || || || |||||||||||||||||||||||||  |||||    
T  21604826 gaaatgaagcttggttcaagtatgacgtggggataacaaatcgcttcatttgctctcctacttacactgcaagatagccctttggcacattcaatacttt 21604925  T
Q  115 cgatgatgcttggctacctgtaaatgaagttcgtctaat---ggcaggtaaacggaaacccatttcaaatattttgaagaaaaaactgaatttatcagat 211  Q
       ||||| ||||||||   | |||||||  ||||||||    ||||||||||||||||||||||||||| |||||||||| ||  ||||||| ||||||    
T  21604926 ---tgatgtttggctactgctgaatgaagcccgtctaatagctgcaggtaaacggaaacccatttcaaatgttttgaagaacaagatgaatttctcagat 21605022  T

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Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 292 - 359
Target Start/End: Original strand, 21605164 - 21605231
Alignment:
Q  292 gacacgagatcacatggtattgtctttgattcctctgtcaaggatcaataagttcaataggagcgcaa 359  Q
    |||| |||||||||||| |||||||| ||| ||||| |||||||||||||||||||||| ||| ||||    
T  21605164 gacaagagatcacatgggattgtcttagatgcctctatcaaggatcaataagttcaataagagtgcaa 21605231  T

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Target: chr4 (Bit Score: 51; Significance: 4e-20; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 15 - 105
Target Start/End: Complemental strand, 17970367 - 17970277
Alignment:
Q  15 gaaatgaagcttggttcaagtatgacttggggatcacaaaccgtttcatcttgtctccaacatataccgcaagatagccctttggcacatt 105  Q
    ||||||||| |||||||||||||||| | |||||||||||||| ||||| |  |||||||| || ||||||||||| ||||||||||||||    
T  17970367 gaaatgaagtttggttcaagtatgacgtagggatcacaaaccgcttcatttcctctccaacgtacaccgcaagatatccctttggcacatt 17970277  T

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Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 15 - 127
Target Start/End: Complemental strand, 27557557 - 27557445
Alignment:
Q  15 gaaatgaagcttggttcaagtatgacttggggatcacaaaccgtttcatcttgtctccaacatataccgcaagatagccctttggcacattcacaacttt 114  Q
    ||||||| | |||||| ||||||||| | |||||||||||||  ||||| |  |||||||||||||| |||||||| ||| ||||||||| |||| | ||    
T  27557557 gaaatgatggttggtttaagtatgacattgggatcacaaacctcttcatttcctctccaacatatacggcaagatatccccttggcacatccacaccctt 27557458  T
Q  115 cgatgatgcttgg 127  Q
     || |||||||||    
T  27557457 tgaagatgcttgg 27557445  T

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Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 15 - 104
Target Start/End: Original strand, 27502879 - 27502968
Alignment:
Q  15 gaaatgaagcttggttcaagtatgacttggggatcacaaaccgtttcatcttgtctccaacatataccgcaagatagccctttggcacat 104  Q
    ||||||||| ||| ||||| |||||| | || ||||||||||| |||||||| ||||| ||||| || |||||||| || ||||||||||    
T  27502879 gaaatgaagtttgattcaaatatgacattggaatcacaaaccgcttcatcttctctcctacataaacggcaagatatccttttggcacat 27502968  T

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Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 25 - 101
Target Start/End: Complemental strand, 27498473 - 27498397
Alignment:
Q  25 ttggttcaagtatgacttggggatcacaaaccgtttcatcttgtctccaacatataccgcaagatagccctttggca 101  Q
    |||||||||||||||  | ||||||||||| |||||||| |  |||||||||||||| || ||||| ||||||||||    
T  27498473 ttggttcaagtatgatatagggatcacaaaacgtttcatttcctctccaacatatactgctagatatccctttggca 27498397  T

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Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 15 - 106
Target Start/End: Original strand, 27431220 - 27431311
Alignment:
Q  15 gaaatgaagcttggttcaagtatgacttggggatcacaaaccgtttcatcttgtctccaacatataccgcaagatagccctttggcacattc 106  Q
    ||||||| | |||||||||||||||  | |||||||||||||  ||||| |  || ||||||||||| |||| ||| |||||||||||||||    
T  27431220 gaaatgacggttggttcaagtatgatattgggatcacaaacctcttcatttcatccccaacatatactgcaatatatccctttggcacattc 27431311  T

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Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 44 - 99
Target Start/End: Complemental strand, 27527200 - 27527145
Alignment:
Q  44 gggatcacaaaccgtttcatcttgtctccaacatataccgcaagatagccctttgg 99  Q
    ||||||||||||||||||   || ||||||||||| ||||||||||||||||||||    
T  27527200 gggatcacaaaccgtttctgtttatctccaacatacaccgcaagatagccctttgg 27527145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 15 - 117
Target Start/End: Complemental strand, 27425880 - 27425778
Alignment:
Q  15 gaaatgaagcttggttcaagtatgacttggggatcacaaaccgtttcatcttgtctccaacatataccgcaagatagccctttggcacattcacaacttt 114  Q
    ||||||| | |||||||||||||||  | ||||||||| |||| ||    || |||||||||||||| |||||||| ||||||||||| | |||| ||||    
T  27425880 gaaatgatggttggttcaagtatgatattgggatcacataccgcttttgtttctctccaacatatactgcaagatatccctttggcacgtccacagcttt 27425781  T
Q  115 cga 117  Q
    |||    
T  27425780 cga 27425778  T

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Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 15 - 104
Target Start/End: Original strand, 27444866 - 27444955
Alignment:
Q  15 gaaatgaagcttggttcaagtatgacttggggatcacaaaccgtttcatcttgtctccaacatataccgcaagatagccctttggcacat 104  Q
    ||||||| | |||| ||||||||||  | |||||||||||||  ||||| |  |||||||| ||||| |||||||| |||||||||||||    
T  27444866 gaaatgatgattggctcaagtatgatattgggatcacaaacctcttcatttcctctccaacgtatactgcaagatatccctttggcacat 27444955  T

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Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 47 - 127
Target Start/End: Complemental strand, 27554345 - 27554265
Alignment:
Q  47 atcacaaaccgtttcatcttgtctccaacatataccgcaagatagccctttggcacattcacaactttcgatgatgcttgg 127  Q
    ||||||||||| ||||| |  |||||||||||||| ||||| || ||||||||||||| |||  |||| || |||||||||    
T  27554345 atcacaaaccgcttcatttcctctccaacatatactgcaaggtatccctttggcacatccactccttttgaagatgcttgg 27554265  T

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Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 15 - 102
Target Start/End: Original strand, 27414376 - 27414463
Alignment:
Q  15 gaaatgaagcttggttcaagtatgacttggggatcacaaaccgtttcatcttgtctccaacatataccgcaagatagccctttggcac 102  Q
    ||||||| | |||||||||||||||    || |||||||||||| |||| || |||||||| || || ||||||||||| ||||||||    
T  27414376 gaaatgagggttggttcaagtatgatacaggaatcacaaaccgtctcattttatctccaacgtagactgcaagatagccttttggcac 27414463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 15 - 114
Target Start/End: Original strand, 27570121 - 27570220
Alignment:
Q  15 gaaatgaagcttggttcaagtatgacttggggatcacaaaccgtttcatcttgtctccaacatataccgcaagatagccctttggcacattcacaacttt 114  Q
    ||||||||| |||| | ||||||||   |||||||||| ||||  ||   || |||||||||||||| |||||||| ||||||||||||| |||| ||||    
T  27570121 gaaatgaaggttggcttaagtatgatacggggatcacataccgcgtctgtttctctccaacatatactgcaagatatccctttggcacatccacagcttt 27570220  T

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Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 25 - 99
Target Start/End: Complemental strand, 27501375 - 27501301
Alignment:
Q  25 ttggttcaagtatgacttggggatcacaaaccgtttcatcttgtctccaacatataccgcaagatagccctttgg 99  Q
    |||||| ||||||||  | |||||||||||||||||||| |  |||||||||||||| || ||| | ||||||||    
T  27501375 ttggtttaagtatgatattgggatcacaaaccgtttcatttcctctccaacatatactgctagacatccctttgg 27501301  T

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Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 114
Target Start/End: Complemental strand, 27415679 - 27415593
Alignment:
Q  25 ttggttcaagtatgacttggggatcacaaaccgtttcatcttgtct-ccaacatataccgcaagatagccctttggcacattcacaacttt 114  Q
    |||||||||||||||  ||||||||||||| || ||    |||| | |||||||| || |||||||| ||||||||||||| |||||||||    
T  27415679 ttggttcaagtatgatatggggatcacaaatcgctt----ttgttttccaacatacactgcaagatatccctttggcacatccacaacttt 27415593  T

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Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 102
Target Start/End: Original strand, 27513858 - 27513935
Alignment:
Q  25 ttggttcaagtatgacttggggatcacaaaccgtttcatcttgtctccaacatataccgcaagatagccctttggcac 102  Q
    |||||||||||||||  | |||||||||||||| ||||| || ||||| ||||| || || ||||| || ||||||||    
T  27513858 ttggttcaagtatgatattgggatcacaaaccgcttcattttctctcctacatacactgctagatatccttttggcac 27513935  T

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Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 114
Target Start/End: Original strand, 27566033 - 27566122
Alignment:
Q  25 ttggttcaagtatgacttggggatcacaaaccgtttcatcttgtctccaacatataccgcaagatagccctttggcacattcacaacttt 114  Q
    |||||||| ||||||  ||||||||||||| || ||    || ||||||||||| || |||||||| ||||||||||| | |||||||||    
T  27566033 ttggttcaggtatgatatggggatcacaaatcgcttttgtttctctccaacatacactgcaagatatccctttggcacgtccacaacttt 27566122  T

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Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 47 - 99
Target Start/End: Complemental strand, 27446183 - 27446131
Alignment:
Q  47 atcacaaaccgtttcatcttgtctccaacatataccgcaagatagccctttgg 99  Q
    |||||||| || ||||| || ||||||||||| |||||||||||||| |||||    
T  27446183 atcacaaatcgcttcattttttctccaacataaaccgcaagatagccttttgg 27446131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 15 - 99
Target Start/End: Original strand, 27556451 - 27556535
Alignment:
Q  15 gaaatgaagcttggttcaagtatgacttggggatcacaaaccgtttcatcttgtctccaacatataccgcaagatagccctttgg 99  Q
    ||||||||| |||||||||  ||||  |||| |||||||| || ||||| || ||||||||||| || || |||||||| |||||    
T  27556451 gaaatgaaggttggttcaataatgaaatgggaatcacaaatcgcttcattttttctccaacataaactgcgagatagccttttgg 27556535  T

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Target: chr2 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 15 - 105
Target Start/End: Complemental strand, 3073637 - 3073547
Alignment:
Q  15 gaaatgaagcttggttcaagtatgacttggggatcacaaaccgtttcatcttgtctccaacatataccgcaagatagccctttggcacatt 105  Q
    ||||||||| |||||||||||||||| | |||||||||||||| ||||| |  |||||||| || ||||||||||| ||||||||||||||    
T  3073637 gaaatgaagtttggttcaagtatgacgtagggatcacaaaccgcttcatttcctctccaacgtacaccgcaagatatccctttggcacatt 3073547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 15 - 100
Target Start/End: Original strand, 1754313 - 1754398
Alignment:
Q  15 gaaatgaagcttggttcaagtatgacttggggatcacaaaccgtttcatcttgtctccaacatataccgcaagatagccctttggc 100  Q
    ||||||| | |||||||||||||||   ||||||||||||||| ||||| |  |||||||||||||| || ||||| || ||||||    
T  1754313 gaaatgacgattggttcaagtatgatacggggatcacaaaccgcttcatttcttctccaacatatacagctagatatccttttggc 1754398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 25 - 104
Target Start/End: Original strand, 1756839 - 1756918
Alignment:
Q  25 ttggttcaagtatgacttggggatcacaaaccgtttcatcttgtctccaacatataccgcaagatagccctttggcacat 104  Q
    |||||||||||||||  | |||||||||||||| |||   || ||||||||||  || ||||||||||||||||| ||||    
T  1756839 ttggttcaagtatgatattgggatcacaaaccgcttctgtttctctccaacattcactgcaagatagccctttggtacat 1756918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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