View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1836_low_44 (Length: 424)

Name: NF1836_low_44
Description: NF1836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1836_low_44
NF1836_low_44
[»] chr4 (13 HSPs)
chr4 (201-412)||(52606876-52607089)
chr4 (281-412)||(40413187-40413318)
chr4 (265-412)||(48316156-48316303)
chr4 (281-412)||(53560263-53560394)
chr4 (283-408)||(27301543-27301669)
chr4 (313-412)||(52632887-52632986)
chr4 (338-399)||(42150270-42150331)
chr4 (334-382)||(12865271-12865319)
chr4 (328-408)||(18910357-18910437)
chr4 (315-397)||(16492112-16492196)
chr4 (191-235)||(40413353-40413396)
chr4 (334-362)||(48684504-48684532)
chr4 (341-412)||(50500992-50501064)
[»] chr8 (4 HSPs)
chr8 (247-412)||(42035455-42035620)
chr8 (285-412)||(12949331-12949458)
chr8 (332-383)||(24964206-24964257)
chr8 (307-417)||(43345672-43345782)
[»] chr1 (7 HSPs)
chr1 (248-412)||(386590-386754)
chr1 (264-362)||(50011100-50011197)
chr1 (281-354)||(5806217-5806290)
chr1 (281-383)||(17180002-17180103)
chr1 (300-395)||(10462436-10462531)
chr1 (330-362)||(35395321-35395353)
chr1 (314-356)||(30674192-30674234)
[»] chr2 (8 HSPs)
chr2 (251-412)||(16803322-16803483)
chr2 (251-412)||(16842605-16842766)
chr2 (281-412)||(7293093-7293224)
chr2 (281-411)||(9367940-9368070)
chr2 (286-414)||(34510819-34510946)
chr2 (328-408)||(6150120-6150200)
chr2 (345-399)||(7136900-7136954)
chr2 (345-408)||(40772105-40772169)
[»] chr7 (16 HSPs)
chr7 (188-399)||(26811750-26811961)
chr7 (247-412)||(8232205-8232370)
chr7 (281-412)||(36250607-36250738)
chr7 (281-410)||(45948166-45948295)
chr7 (284-412)||(43988158-43988286)
chr7 (285-411)||(20949533-20949659)
chr7 (288-362)||(47159632-47159704)
chr7 (329-408)||(33800380-33800460)
chr7 (334-417)||(47421036-47421119)
chr7 (314-356)||(29005974-29006016)
chr7 (320-414)||(34708890-34708984)
chr7 (330-363)||(2735554-2735587)
chr7 (334-382)||(2735951-2735999)
chr7 (340-408)||(35594284-35594352)
chr7 (191-235)||(36250531-36250574)
chr7 (329-405)||(38958405-38958481)
[»] chr3 (5 HSPs)
chr3 (188-358)||(22977650-22977826)
chr3 (309-405)||(49032816-49032913)
chr3 (282-362)||(2032526-2032606)
chr3 (329-405)||(32263236-32263312)
chr3 (328-408)||(55006962-55007042)
[»] chr5 (5 HSPs)
chr5 (251-383)||(35206134-35206266)
chr5 (251-382)||(35210886-35211017)
chr5 (302-407)||(28613354-28613459)
chr5 (328-408)||(1199579-1199659)
chr5 (315-408)||(35112506-35112601)
[»] scaffold0114 (1 HSPs)
scaffold0114 (281-412)||(37690-37820)
[»] chr6 (1 HSPs)
chr6 (333-405)||(10546712-10546784)


Alignment Details
Target: chr4 (Bit Score: 121; Significance: 7e-62; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 201 - 412
Target Start/End: Original strand, 52606876 - 52607089
Alignment:
Q  201 tttttctattattactaaaattataactttaaattccttnnnnnnn-ttataactttaaattagttatatatctca-ttttcatagggatattttagtca 298  Q
    |||||| ||||||||||||||||||||||||||||||||        ||||||||||||||||||||||||| ||| |||| |||||||||||||||||     
T  52606876 tttttcgattattactaaaattataactttaaattccttgaaaaaaattataactttaaattagttatatatatcactttttatagggatattttagtct 52606975  T
Q  299 ttttattgaatataaatctttctttccttatactatcactcataccaaacaactaaaaaatcattacacttttcactcactttctcttcactttctttcc 398  Q
    ||||||| ||||||||||||| |||||||  ||||||| ||||||||||||| ||||||||||| ||||||| |||||||||||| |||| |||||||||    
T  52606976 ttttattaaatataaatctttatttccttcaactatcattcataccaaacaattaaaaaatcatcacactttccactcactttcttttcattttctttcc 52607075  T
Q  399 tataacaatcattc 412  Q
    ||||||||||||||    
T  52607076 tataacaatcattc 52607089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 281 - 412
Target Start/End: Complemental strand, 40413318 - 40413187
Alignment:
Q  281 atagggatattttagtcattttattgaatataaatctttctttccttatactatcactcataccaaacaactaaaaaatcattacacttttcactcactt 380  Q
    |||||||| |||||||||||||||| ||| |||||||||||||||||  ||||||| | ||||||||||||||||||||||| ||||||| |||||||||    
T  40413318 atagggatgttttagtcattttattaaatttaaatctttctttcctttcactatcatttataccaaacaactaaaaaatcatcacactttccactcactt 40413219  T
Q  381 tctcttcactttctttcctataacaatcattc 412  Q
    ||| ||||||||||||||||||||||||||||    
T  40413218 tcttttcactttctttcctataacaatcattc 40413187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 265 - 412
Target Start/End: Complemental strand, 48316303 - 48316156
Alignment:
Q  265 tatatatctcattttcatagggatattttagtcattttattgaatataaatctttctttccttatactatcactcataccaaacaactaaaaaatcatta 364  Q
    |||||||| |||| | |||||||||| | |||||||||||| |||||||||||||||||||||  ||| ||||| |||||||||||||||||||||||      
T  48316303 tatatatcacattcttatagggatatgtcagtcattttattaaatataaatctttctttcctttcactttcactaataccaaacaactaaaaaatcatct 48316204  T
Q  365 cacttttcactcactttctcttcactttctttcctataacaatcattc 412  Q
    ||||||  ||||||||||| ||||||||||||||| ||||||||||||    
T  48316203 cactttctactcactttctattcactttctttcctctaacaatcattc 48316156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 281 - 412
Target Start/End: Original strand, 53560263 - 53560394
Alignment:
Q  281 atagggatattttagtcattttattgaatataaatctttctttccttatactatcactcataccaaacaactaaaaaatcattacacttttcactcactt 380  Q
    |||||| ||||||| |||||||||| ||||||| |||||||||||||| | | |||||||||||||||| |||||||| |||  ||||||  |||| | |    
T  53560263 atagggttattttattcattttattaaatataactctttctttccttacattttcactcataccaaacatctaaaaaaccatctcactttctactctcat 53560362  T
Q  381 tctcttcactttctttcctataacaatcattc 412  Q
    ||| ||||||||||||||| ||||||||||||    
T  53560363 tctattcactttctttcctctaacaatcattc 53560394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 283 - 408
Target Start/End: Original strand, 27301543 - 27301669
Alignment:
Q  283 agggatattttagtcattttattga-atataaatctttctttccttatactatcactcataccaaacaactaaaaaatcattacacttttcactcacttt 381  Q
    ||||||||||||||||||||||| | ||||||||||||||||||||  ||| |||| ||||||||||||||||| ||||||   |||||| |||| ||||    
T  27301543 agggatattttagtcattttattaacatataaatctttctttccttgcactctcacacataccaaacaactaaacaatcatcctactttttactctcttt 27301642  T
Q  382 ctcttcactttctttcctataacaatc 408  Q
    ||  |||||||||||||| ||||||||    
T  27301643 ctactcactttctttcctttaacaatc 27301669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 313 - 412
Target Start/End: Original strand, 52632887 - 52632986
Alignment:
Q  313 aatctttctttccttatactatcactcataccaaacaactaaaaaatcattacacttttcactcactttctcttcactttctttcctataacaatcattc 412  Q
    |||||||||||||||  ||| ||||| |||||||||||||||||||||||  |||||| ||| |||||||| ||||||||||||||| ||||||||||||    
T  52632887 aatctttctttcctttcactttcactaataccaaacaactaaaaaatcatctcactttccacccactttctattcactttctttcctctaacaatcattc 52632986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 338 - 399
Target Start/End: Original strand, 42150270 - 42150331
Alignment:
Q  338 tcataccaaacaactaaaaaatcattacacttttcactcactttctcttcactttctttcct 399  Q
    |||||||||||||||||||||||||  ||||||| | ||| ||||| ||||||||| |||||    
T  42150270 tcataccaaacaactaaaaaatcatctcactttttattcattttctattcactttcattcct 42150331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 334 - 382
Target Start/End: Original strand, 12865271 - 12865319
Alignment:
Q  334 tcactcataccaaacaactaaaaaatcattacacttttcactcactttc 382  Q
    ||||| ||||||||||||||||||||||| | ||||| |||||||||||    
T  12865271 tcactaataccaaacaactaaaaaatcatcaaactttccactcactttc 12865319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 328 - 408
Target Start/End: Complemental strand, 18910437 - 18910357
Alignment:
Q  328 atactatcactcataccaaacaactaaaaaatcattacacttttcactcactttctcttcactttctttcctataacaatc 408  Q
    ||||||||||| | |||||||||||||| ||||||  || |||||||| |||||||  |||||||| |||||  |||||||    
T  18910437 atactatcacttaaaccaaacaactaaataatcatctcatttttcacttactttctactcactttcattccttcaacaatc 18910357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 315 - 397
Target Start/End: Original strand, 16492112 - 16492196
Alignment:
Q  315 tctttctttcct--tatactatcactcataccaaacaactaaaaaatcattacacttttcactcactttctcttcactttctttc 397  Q
    ||||||||||||  | |||| |||||| ||||||||||| || |||||||  |||||||  |||||||||| || ||||||||||    
T  16492112 tctttctttcctcttttactttcactcttaccaaacaaccaacaaatcatctcactttttcctcactttctttttactttctttc 16492196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 191 - 235
Target Start/End: Complemental strand, 40413396 - 40413353
Alignment:
Q  191 ggttatgtagtttttctattattactaaaattataactttaaatt 235  Q
    ||||||||||||||| |||||||| |||||||||||||| |||||    
T  40413396 ggttatgtagttttt-tattattaataaaattataacttaaaatt 40413353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 334 - 362
Target Start/End: Original strand, 48684504 - 48684532
Alignment:
Q  334 tcactcataccaaacaactaaaaaatcat 362  Q
    |||||||||||||||||||||||||||||    
T  48684504 tcactcataccaaacaactaaaaaatcat 48684532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 341 - 412
Target Start/End: Original strand, 50500992 - 50501064
Alignment:
Q  341 taccaaacaactaaa-aaatcattacacttttcactcactttctcttcactttctttcctataacaatcattc 412  Q
    ||||||||||| ||| |||||||  |||||||||||||||||||  | ||||||  |||| ||||||||||||    
T  50500992 taccaaacaaccaaataaatcatctcacttttcactcactttctacttactttcaatcctctaacaatcattc 50501064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 114; Significance: 1e-57; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 247 - 412
Target Start/End: Original strand, 42035455 - 42035620
Alignment:
Q  247 ttataactttaaattagttatatatctcattttcatagggatattttagtcattttattgaatataaatctttctttccttatactatcactcataccaa 346  Q
    ||||||||||||||||| |||||||| | || |  |||||||||||||||||||||||| ||||||||||||||||||||| ||| |||||||| |||||    
T  42035455 ttataactttaaattaggtatatatcaccttcttgtagggatattttagtcattttattaaatataaatctttctttccttctaccatcactcaaaccaa 42035554  T
Q  347 acaactaaaaaatcattacacttttcactcactttctcttcactttctttcctataacaatcattc 412  Q
    |||||||||||||||| ||||||| |||||||||||| ||||||||||||||||||||||||||||    
T  42035555 acaactaaaaaatcatcacactttccactcactttcttttcactttctttcctataacaatcattc 42035620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 285 - 412
Target Start/End: Complemental strand, 12949458 - 12949331
Alignment:
Q  285 ggatattttagtcattttattgaatataaatctttctttccttatactatcactcataccaaacaactaaaaaatcattacacttttcactcactttctc 384  Q
    |||||| |||||||||||||| |||||||||||||||||||||  ||| ||| | |||||||||||||||||||||||  ||||||  |||| ||||||     
T  12949458 ggatatattagtcattttattaaatataaatctttctttccttgcactttcattgataccaaacaactaaaaaatcatctcactttctactctctttcta 12949359  T
Q  385 ttcactttctttcctataacaatcattc 412  Q
    ||||||||||||||| ||||||||||||    
T  12949358 ttcactttctttcctctaacaatcattc 12949331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 332 - 383
Target Start/End: Original strand, 24964206 - 24964257
Alignment:
Q  332 tatcactcataccaaacaactaaaaaatcattacacttttcactcactttct 383  Q
    ||||||||| |||||||||||||| ||||||  |||||| ||||||||||||    
T  24964206 tatcactcaaaccaaacaactaaataatcatcccactttccactcactttct 24964257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 307 - 417
Target Start/End: Complemental strand, 43345782 - 43345672
Alignment:
Q  307 aatataaatctttctttccttatactatcactcataccaaacaactaaaaaatcattacacttttcactcactttc-tcttcactttctttcctataaca 405  Q
    |||||| ||||||||||| ||  ||| ||||||||||||||||   ||| ||||||  |||||| || |||||||| |||| |||||||||||| |||||    
T  43345782 aatatacatctttctttcttttcactttcactcataccaaacactcaaacaatcatcccactttccattcactttcctctt-actttctttcctttaaca 43345684  T
Q  406 atcattcatctc 417  Q
    ||| ||| ||||    
T  43345683 atctttcctctc 43345672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 113; Significance: 4e-57; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 248 - 412
Target Start/End: Original strand, 386590 - 386754
Alignment:
Q  248 tataactttaaattagttatatatctcattttcatagggatattttagtcattttattgaatataaatctttctttccttatactatcactcataccaaa 347  Q
    ||||||||||||||||||||||||| | || | ||||||||||||||||||||||| | ||||||||||||||||||||| |||||||||||||| ||||    
T  386590 tataactttaaattagttatatatcaccttcttatagggatattttagtcattttaataaatataaatctttctttccttctactatcactcataacaaa 386689  T
Q  348 caactaaaaaatcattacacttttcactcactttctcttcactttctttcctataacaatcattc 412  Q
    |||| ||||||||||  |||||| |||||||||||| ||||||||||||||||||||||||||||    
T  386690 caaccaaaaaatcatcgcactttccactcactttcttttcactttctttcctataacaatcattc 386754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 264 - 362
Target Start/End: Original strand, 50011100 - 50011197
Alignment:
Q  264 ttatatatctcattttcatagggatattttagtcattttattgaatataaatctttctttccttatactatcactcataccaaacaactaaaaaatcat 362  Q
    ||||||||| | |||| |||||||||||| |||||||||| | ||||||||||||||||||||| |||||||||||||| |||||||||||||||||||    
T  50011100 ttatatatcacctttttatagggatattt-agtcattttaataaatataaatctttctttccttctactatcactcatagcaaacaactaaaaaatcat 50011197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 281 - 354
Target Start/End: Original strand, 5806217 - 5806290
Alignment:
Q  281 atagggatattttagtcattttattgaatataaatctttctttccttatactatcactcataccaaacaactaa 354  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||  ||| |||||||||||||||||||||    
T  5806217 atagggatattttagtcattttattaaatataaatctttctttccttccactttcactcataccaaacaactaa 5806290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 281 - 383
Target Start/End: Complemental strand, 17180103 - 17180002
Alignment:
Q  281 atagggatattttagtcattttattgaatataaatctttctttccttatactatcactcataccaaacaactaaaaaatcattacacttttcactcactt 380  Q
    ||||||||||||||||||||||||| ||| ||||| |||||||| ||   |||||||| ||||||||||||||||||||||| ||||||| || ||||||    
T  17180103 atagggatattttagtcattttattaaat-taaatatttctttcgtttccctatcacttataccaaacaactaaaaaatcatcacactttccattcactt 17180005  T
Q  381 tct 383  Q
    |||    
T  17180004 tct 17180002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 300 - 395
Target Start/End: Original strand, 10462436 - 10462531
Alignment:
Q  300 tttattgaatataaatctttctttccttatactatcactcataccaaacaactaaaaaatcattacacttttcactcactttctcttcactttctt 395  Q
    |||||| |||||||||||| ||||||||  ||| |||||||||||||||||||||||||||||| || ||| || ||| ||||| |||||||||||    
T  10462436 tttattaaatataaatcttactttccttccactttcactcataccaaacaactaaaaaatcattccattttccattcattttctattcactttctt 10462531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 330 - 362
Target Start/End: Complemental strand, 35395353 - 35395321
Alignment:
Q  330 actatcactcataccaaacaactaaaaaatcat 362  Q
    |||||||||||||||||||||||||||||||||    
T  35395353 actatcactcataccaaacaactaaaaaatcat 35395321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 314 - 356
Target Start/End: Complemental strand, 30674234 - 30674192
Alignment:
Q  314 atctttctttccttatactatcactcataccaaacaactaaaa 356  Q
    |||||||||||||| ||||||| |||||||||||| |||||||    
T  30674234 atctttctttccttctactatccctcataccaaactactaaaa 30674192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 110; Significance: 3e-55; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 251 - 412
Target Start/End: Complemental strand, 16803483 - 16803322
Alignment:
Q  251 aactttaaattagttatatatctcattttcatagggatattttagtcattttattgaatataaatctttctttccttatactatcactcataccaaacaa 350  Q
    ||||||||||||||||||||||   || | ||||||||||||||||||||||| | ||||||||||||||||||||| ||||||||||||||||||||||    
T  16803483 aactttaaattagttatatatcaacttcttatagggatattttagtcattttaataaatataaatctttctttccttctactatcactcataccaaacaa 16803384  T
Q  351 ctaaaaaatcattacacttttcactcactttctcttcactttctttcctataacaatcattc 412  Q
    |||||||||||| ||||||| || ||||||||| ||||||||||||| ||||||||||||||    
T  16803383 ctaaaaaatcatcacactttccattcactttcttttcactttctttcttataacaatcattc 16803322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 251 - 412
Target Start/End: Complemental strand, 16842766 - 16842605
Alignment:
Q  251 aactttaaattagttatatatctcattttcatagggatattttagtcattttattgaatataaatctttctttccttatactatcactcataccaaacaa 350  Q
    ||||||||||||||||||||||   || | ||||||||||||||||||||||| | ||||||||||||||||||||| ||||||||||||||||||||||    
T  16842766 aactttaaattagttatatatcaacttcttatagggatattttagtcattttaataaatataaatctttctttccttctactatcactcataccaaacaa 16842667  T
Q  351 ctaaaaaatcattacacttttcactcactttctcttcactttctttcctataacaatcattc 412  Q
    |||||||||||| ||||||| || ||||||||| ||||||||||||| ||||||||||||||    
T  16842666 ctaaaaaatcatcacactttccattcactttcttttcactttctttcttataacaatcattc 16842605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 281 - 412
Target Start/End: Complemental strand, 7293224 - 7293093
Alignment:
Q  281 atagggatattttagtcattttattgaatataaatctttctttccttatactatcactcataccaaacaactaaaaaatcattacacttttcactcactt 380  Q
    ||||||||||||||||||||||| | ||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||  |||||| |||||||||    
T  7293224 atagggatattttagtcattttaataaatataaatatttctttccttctactatcactcataccaaacaactaaaaaatcatcgcactttccactcactt 7293125  T
Q  381 tctcttcactttctttcctataacaatcattc 412  Q
    ||| ||||||||||||||||||||||||||||    
T  7293124 tcttttcactttctttcctataacaatcattc 7293093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 281 - 411
Target Start/End: Original strand, 9367940 - 9368070
Alignment:
Q  281 atagggatattttagtcattttattgaatataaatctttctttccttatactatcactcataccaaacaactaaaaaatcattacacttttcactcactt 380  Q
    |||||| |||||||||||||||||| ||||||||| |||||||||||| ||| |||||||||||||||||||||||||||||  ||||||| |||| |||    
T  9367940 atagggttattttagtcattttattaaatataaatatttctttccttacactttcactcataccaaacaactaaaaaatcatctcactttttactctctt 9368039  T
Q  381 tctcttcactttctttcctataacaatcatt 411  Q
    ||| ||||||||||||||| |||||||||||    
T  9368040 tctattcactttctttcctctaacaatcatt 9368070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 286 - 414
Target Start/End: Original strand, 34510819 - 34510946
Alignment:
Q  286 gatattttagtcattttattgaatataaatctttctttccttatactatcactcataccaaacaactaaaaaatcattacacttttcactcactttctct 385  Q
    |||||||||||||||||||| ||||||||||||||||| |||   |||| | | |||||||||||||||||| |||| |||||||  ||||||||||| |    
T  34510819 gatattttagtcattttattaaatataaatctttcttttctttccctattatttataccaaacaactaaaaa-tcatcacactttctactcactttcttt 34510917  T
Q  386 tcactttctttcctataacaatcattcat 414  Q
    |||||||||||||||||||||||||||||    
T  34510918 tcactttctttcctataacaatcattcat 34510946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 328 - 408
Target Start/End: Complemental strand, 6150200 - 6150120
Alignment:
Q  328 atactatcactcataccaaacaactaaaaaatcattacacttttcactcactttctcttcactttctttcctataacaatc 408  Q
    ||||||||||||| |||||||||||||| ||||||| |||||| ||||||||||||  |||||||| |||||  |||||||    
T  6150200 atactatcactcaaaccaaacaactaaataatcatttcactttccactcactttctactcactttcattccttcaacaatc 6150120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 345 - 399
Target Start/End: Complemental strand, 7136954 - 7136900
Alignment:
Q  345 aaacaactaaaaaatcattacacttttcactcactttctcttcactttctttcct 399  Q
    ||||||||||||||||||  ||||||| ||||||||||| | ||||||| |||||    
T  7136954 aaacaactaaaaaatcatctcactttttactcactttctatccactttcattcct 7136900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 345 - 408
Target Start/End: Original strand, 40772105 - 40772169
Alignment:
Q  345 aaacaactaaaa-aatcattacacttttcactcactttctcttcactttctttcctataacaatc 408  Q
    ||||||| |||| ||||||  |||||| || ||||||||||||||||||| ||||| ||||||||    
T  40772105 aaacaaccaaaataatcatctcactttccattcactttctcttcactttcattcctttaacaatc 40772169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 108; Significance: 4e-54; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 188 - 399
Target Start/End: Complemental strand, 26811961 - 26811750
Alignment:
Q  188 tacggttatgtagtttttctattattactaaaattataactttaaattccttnnnnnnn-ttataactttaaattagttatatatctcattttcataggg 286  Q
    ||||||||| ||||||| | || ||||||||||| ||||||| |||||||||        ||||||||||||||||| |||||||| |||| | || |||    
T  26811961 tacggttatatagtttt-cgatcattactaaaatgataacttcaaattccttaaaaaaaattataactttaaattaggtatatatcacattcttatgggg 26811863  T
Q  287 atattttagtcattttattgaatataaatctttctttccttatactatcactcataccaaacaactaaaaaatcattacacttttcactcactttctctt 386  Q
    ||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||| |||||||||||||| |||||| ||||| ||||||| ||    
T  26811862 atattttagtcattttattaaatataaatctttctttccttctactatcactcataccaaataactaaaaaatcatcacacttctcactaactttctttt 26811763  T
Q  387 cactttctttcct 399  Q
    |||||||||||||    
T  26811762 cactttctttcct 26811750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 247 - 412
Target Start/End: Complemental strand, 8232370 - 8232205
Alignment:
Q  247 ttataactttaaattagttatatatctcattttcatagggatattttagtcattttattgaatataaatctttctttccttatactatcactcataccaa 346  Q
    |||||| |||||||||  || ||||| | |||| ||||||||||||||||||||||||| |||||||||||||| ||||||  |||||||||||||||||    
T  8232370 ttataattttaaattatatacatatcacctttttatagggatattttagtcattttattaaatataaatctttcattcctttcactatcactcataccaa 8232271  T
Q  347 acaactaaaaaatcattacacttttcactcactttctcttcactttctttcctataacaatcattc 412  Q
    |||||||||||||||||| | ||| |||||||||||| ||||||||||||||||||||||||||||    
T  8232270 acaactaaaaaatcattagattttccactcactttcttttcactttctttcctataacaatcattc 8232205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 281 - 412
Target Start/End: Original strand, 36250607 - 36250738
Alignment:
Q  281 atagggatattttagtcattttattgaatataaatctttctttccttatactatcactcataccaaacaactaaaaaatcattacacttttcactcactt 380  Q
    |||||||| |||||||||||||||| ||| |||||||||||||||||  ||||||| | ||||||||||||||||||||||| ||||||| |||||||||    
T  36250607 atagggatgttttagtcattttattaaatttaaatctttctttcctttcactatcatttataccaaacaactaaaaaatcatcacactttccactcactt 36250706  T
Q  381 tctcttcactttctttcctataacaatcattc 412  Q
    ||| ||||||||||||||||||||||||||||    
T  36250707 tcttttcactttctttcctataacaatcattc 36250738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 281 - 410
Target Start/End: Original strand, 45948166 - 45948295
Alignment:
Q  281 atagggatattttagtcattttattgaatataaatctttctttccttatactatcactcataccaaacaactaaaaaatcattacacttttcactcactt 380  Q
    ||||||||||||||||||||||||| ||||||||||||| || |||| | || ||||| |||||||||||||||||| |||| |||||||||||||||||    
T  45948166 atagggatattttagtcattttattaaatataaatcttttttcccttttcctgtcacttataccaaacaactaaaaattcatcacacttttcactcactt 45948265  T
Q  381 tctcttcactttctttcctataacaatcat 410  Q
    | | || |||||||||||||||||||||||    
T  45948266 tttttttactttctttcctataacaatcat 45948295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 284 - 412
Target Start/End: Complemental strand, 43988286 - 43988158
Alignment:
Q  284 gggatattttagtcattttattgaatataaatctttctttccttatactatcactcataccaaacaactaaaaaatcattacacttttcactcactttct 383  Q
    ||||||||| |||||||||||| |||||||||||||||||||||  ||| ||||| |||||||||||||||||||||||  |||||| ||| ||||||||    
T  43988286 gggatatttcagtcattttattaaatataaatctttctttcctttcactttcactaataccaaacaactaaaaaatcatctcactttccacccactttct 43988187  T
Q  384 cttcactttctttcctataacaatcattc 412  Q
     ||||||||||||||| ||||||||||||    
T  43988186 attcactttctttcctctaacaatcattc 43988158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 285 - 411
Target Start/End: Complemental strand, 20949659 - 20949533
Alignment:
Q  285 ggatattttagtcattttattgaatataaatctttctttccttatactatcactcataccaaacaactaaaaaatcattacacttttcactcactttctc 384  Q
    ||||||||||||||||||||| |||||||||||||||||||||| ||| ||| | |||||||||||||||||||||||| ||||||   ||| ||||||     
T  20949659 ggatattttagtcattttattaaatataaatctttctttccttacactttcattgataccaaacaactaaaaaatcatttcactttctgctctctttcta 20949560  T
Q  385 ttcactttctttcctataacaatcatt 411  Q
    ||||||||||||||| |||||||||||    
T  20949559 ttcactttctttcctttaacaatcatt 20949533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 288 - 362
Target Start/End: Complemental strand, 47159704 - 47159632
Alignment:
Q  288 tattttagtcattttattgaatataaatctttctttccttatactatcactcataccaaacaactaaaaaatcat 362  Q
    |||||||||||||||||| |||||||||||  ||||||||   |||||||| |||||||||||||||||||||||    
T  47159704 tattttagtcattttattaaatataaatct--ctttcctttctctatcacttataccaaacaactaaaaaatcat 47159632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 329 - 408
Target Start/End: Complemental strand, 33800460 - 33800380
Alignment:
Q  329 tactatcactcataccaaacaactaaaa-aatcattacacttttcactcactttctcttcactttctttcctataacaatc 408  Q
    |||| |||||| || ||||||||||||| ||||||  |||||| || ||||||||||||||||||| ||||| ||||||||    
T  33800460 tactttcactcctaacaaacaactaaaacaatcatctcactttccattcactttctcttcactttcattcctttaacaatc 33800380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 334 - 417
Target Start/End: Original strand, 47421036 - 47421119
Alignment:
Q  334 tcactcataccaaacaactaaaaaatcattacacttttcactcactttctcttcactttctttcctataacaatcattcatctc 417  Q
    |||||||||||||||||||||||||||||  |||||| || ||||||||| | ||||| | |||||  ||||||| ||| ||||    
T  47421036 tcactcataccaaacaactaaaaaatcatctcactttccattcactttctatacacttccattccttcaacaatctttcctctc 47421119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 314 - 356
Target Start/End: Original strand, 29005974 - 29006016
Alignment:
Q  314 atctttctttccttatactatcactcataccaaacaactaaaa 356  Q
    |||||||||||||| ||||||| |||||||||||| |||||||    
T  29005974 atctttctttccttctactatctctcataccaaactactaaaa 29006016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 320 - 414
Target Start/End: Original strand, 34708890 - 34708984
Alignment:
Q  320 ctttccttatactatcactcataccaaacaactaaaaaatcattacacttttcactcactttctcttcactttctttcctataacaatcattcat 414  Q
    ||||||| ||||||||||| | ||||||||| |||| ||||||  || ||| |||| ||||||| ||||||||| ||| |  ||||||| |||||    
T  34708890 ctttcctcatactatcacttaaaccaaacaattaaataatcatctcattttccacttactttctattcactttcattcattcaacaatctttcat 34708984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 330 - 363
Target Start/End: Complemental strand, 2735587 - 2735554
Alignment:
Q  330 actatcactcataccaaacaactaaaaaatcatt 363  Q
    |||||||||||||||||||||| |||||||||||    
T  2735587 actatcactcataccaaacaaccaaaaaatcatt 2735554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 334 - 382
Target Start/End: Complemental strand, 2735999 - 2735951
Alignment:
Q  334 tcactcataccaaacaactaaaaaatcattacacttttcactcactttc 382  Q
    |||||||||||||||||| ||||||||||   ||||| |||||||||||    
T  2735999 tcactcataccaaacaaccaaaaaatcatctaactttccactcactttc 2735951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 340 - 408
Target Start/End: Original strand, 35594284 - 35594352
Alignment:
Q  340 ataccaaacaactaaaaaatcattacacttttcactcactttctcttcactttctttcctataacaatc 408  Q
    |||||||||||||||| ||||||   |||||   ||||||||||||| ||||||||||||  |||||||    
T  35594284 ataccaaacaactaaataatcatcctactttcttctcactttctcttaactttctttccttcaacaatc 35594352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 191 - 235
Target Start/End: Original strand, 36250531 - 36250574
Alignment:
Q  191 ggttatgtagtttttctattattactaaaattataactttaaatt 235  Q
    ||||||||||||||| |||||||| |||||||||||||| |||||    
T  36250531 ggttatgtagttttt-tattattaataaaattataacttaaaatt 36250574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 329 - 405
Target Start/End: Complemental strand, 38958481 - 38958405
Alignment:
Q  329 tactatcactcataccaaacaactaaaaaatcattacacttttcactcactttctcttcactttctttcctataaca 405  Q
    |||| |||||| ||||||||||| || |||||||  ||||||  |||||||||||  | |||||||||||| |||||    
T  38958481 tactttcactcttaccaaacaaccaacaaatcatctcactttctactcactttcttcttactttctttcctttaaca 38958405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 88; Significance: 4e-42; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 188 - 358
Target Start/End: Original strand, 22977650 - 22977826
Alignment:
Q  188 tacggttatgtagtttttctattattactaaaattataactttaaattccttnnnnnnn-ttataactttaaattagttatatat-----ctcattttca 281  Q
    ||||||||||||||||||| ||| ||| |||||||||||||||||||| |||        |||||||||||||||||||||||||     | | || |||    
T  22977650 tacggttatgtagtttttcgattcttattaaaattataactttaaattgcttgaaaaaaattataactttaaattagttatatataatatcaccttctca 22977749  T
Q  282 tagggatattttagtcattttattgaatataaatctttctttccttatactatcactcataccaaacaactaaaaaa 358  Q
    |||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||| |||||||    
T  22977750 tagggatattttagtcattttattaaatataaatctttctttccttctactatcactcataccaaacaaataaaaaa 22977826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 309 - 405
Target Start/End: Original strand, 49032816 - 49032913
Alignment:
Q  309 tataaatctttctttccttat-actatcactcataccaaacaactaaaaaatcattacacttttcactcactttctcttcactttctttcctataaca 405  Q
    |||| |||||||||||||  | ||| |||| | ||||||||||||||| ||||||  |||||| |||||||||||| ||||||||| ||||| |||||    
T  49032816 tatatatctttctttcctcttcactttcacccctaccaaacaactaaacaatcatctcactttccactcactttctattcactttcattcctttaaca 49032913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 282 - 362
Target Start/End: Complemental strand, 2032606 - 2032526
Alignment:
Q  282 tagggatattttagtcattttattgaatataaatctttctttccttatactatcactcataccaaacaactaaaaaatcat 362  Q
    |||||||||||||||| ||||||| || ||   ||||||||||||| |||| | |||  ||||||||||||||| ||||||    
T  2032606 tagggatattttagtccttttattaaacatgtctctttctttccttttactttaacttctaccaaacaactaaataatcat 2032526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 329 - 405
Target Start/End: Complemental strand, 32263312 - 32263236
Alignment:
Q  329 tactatcactcataccaaacaactaaaaaatcattacacttttcactcactttctcttcactttctttcctataaca 405  Q
    |||| |||||| ||||||||||| || |||||||  ||||||  |||||||||||  | |||||||||||| |||||    
T  32263312 tactttcactcttaccaaacaaccaacaaatcatctcactttctactcactttcttcttactttctttcctttaaca 32263236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 328 - 408
Target Start/End: Original strand, 55006962 - 55007042
Alignment:
Q  328 atactatcactcataccaaacaactaaaaaatcattacacttttcactcactttctcttcactttctttcctataacaatc 408  Q
    |||||||| |||| |||||||||||||| ||||||  |||||| || |||||||||  ||| |||| |||||  |||||||    
T  55006962 atactatctctcaaaccaaacaactaaataatcatctcactttccattcactttctactcattttcattccttcaacaatc 55007042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 85; Significance: 2e-40; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 251 - 383
Target Start/End: Complemental strand, 35206266 - 35206134
Alignment:
Q  251 aactttaaattagttatatatctcattttcatagggatattttagtcattttattgaatataaatctttctttccttatactatcactcataccaaacaa 350  Q
    |||||||||||||||||||||| | || | ||||||||||||||||||||||| | ||||||||| ||||||||||| || ||||| |||||||||||||    
T  35206266 aactttaaattagttatatatcaccttcttatagggatattttagtcattttaataaatataaatttttctttccttctattatcattcataccaaacaa 35206167  T
Q  351 ctaaaaaatcattacacttttcactcactttct 383  Q
    |||||||||||| ||||||| ||||||||||||    
T  35206166 ctaaaaaatcatcacactttccactcactttct 35206134  T

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Target: chr5; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 251 - 382
Target Start/End: Original strand, 35210886 - 35211017
Alignment:
Q  251 aactttaaattagttatatatctcattttcatagggatattttagtcattttattgaatataaatctttctttccttatactatcactcataccaaacaa 350  Q
    ||||||||||||||||||||||   || | ||||||||||||||||||||||| | ||||||||| ||||||||||| || ||||| |||||||||||||    
T  35210886 aactttaaattagttatatatcatcttcttatagggatattttagtcattttaataaatataaatttttctttccttctattatcattcataccaaacaa 35210985  T
Q  351 ctaaaaaatcattacacttttcactcactttc 382  Q
    |||||||||||| ||||||| |||||||||||    
T  35210986 ctaaaaaatcatcacactttccactcactttc 35211017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 302 - 407
Target Start/End: Original strand, 28613354 - 28613459
Alignment:
Q  302 tattgaatataaatctttctttccttatactatcactcataccaaacaactaaaaaatcattacacttttcactcactttctcttcactttctttcctat 401  Q
    |||| ||||||||| |||||||||||  ||| ||  |||||||||||||||||||||||||   |||||||| ||||||||| ||||||||| ||||| |    
T  28613354 tattaaatataaatatttctttcctttcactttctgtcataccaaacaactaaaaaatcatcttacttttcattcactttctattcactttcattccttt 28613453  T
Q  402 aacaat 407  Q
    ||||||    
T  28613454 aacaat 28613459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 328 - 408
Target Start/End: Original strand, 1199579 - 1199659
Alignment:
Q  328 atactatcactcataccaaacaactaaaaaatcattacacttttcactcactttctcttcactttctttcctataacaatc 408  Q
    ||||||||||||| |||||||||||||| ||||||| |||||| ||||||||||||  |||||||| |||||  |||||||    
T  1199579 atactatcactcaaaccaaacaactaaataatcatttcactttccactcactttctactcactttcattccttcaacaatc 1199659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 315 - 408
Target Start/End: Original strand, 35112506 - 35112601
Alignment:
Q  315 tctttctttcct--tatactatcactcataccaaacaactaaaaaatcattacacttttcactcactttctcttcactttctttcctataacaatc 408  Q
    ||||||||||||  | |||| |||||| ||||||||||| || |||||||  ||||||  |||||||||||  | |||||||||||| ||||||||    
T  35112506 tctttctttcctcttttactttcactcttaccaaacaaccaacaaatcatctcactttctactcactttcttcttactttctttcctttaacaatc 35112601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0114 (Bit Score: 84; Significance: 9e-40; HSPs: 1)
Name: scaffold0114
Description:

Target: scaffold0114; HSP #1
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 281 - 412
Target Start/End: Complemental strand, 37820 - 37690
Alignment:
Q  281 atagggatattttagtcattttattgaatataaatctttctttccttatactatcactcataccaaacaactaaaaaatcattacacttttcactcactt 380  Q
    ||||||||||||||||||||||||| ||||||||||||| ||| |||  |||||||||||||||||||| | |||||||||| ||||||| |||||||||    
T  37820 atagggatattttagtcattttattaaatataaatctttattttctttcactatcactcataccaaacagcaaaaaaatcatcacactttacactcactt 37721  T
Q  381 tctcttcactttctttcctataacaatcattc 412  Q
    | | ||||||||||||||||||||||||||||    
T  37720 t-ttttcactttctttcctataacaatcattc 37690  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 333 - 405
Target Start/End: Complemental strand, 10546784 - 10546712
Alignment:
Q  333 atcactcataccaaacaactaaaaaatcattacacttttcactcactttctcttcactttctttcctataaca 405  Q
    |||||||| |||||||||||| ||||||||| |||||   ||||| ||||| | ||||||| ||||| |||||    
T  10546784 atcactcaaaccaaacaactagaaaatcatttcacttactactcaatttctatccactttcattcctttaaca 10546712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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