View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1836_low_47 (Length: 410)
Name: NF1836_low_47
Description: NF1836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1836_low_47 |
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Alignment Details
Target: chr2 (Bit Score: 334; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 17 - 399
Target Start/End: Original strand, 36104725 - 36105107
Alignment:
| Q |
17 |
catttatatcataacacactcaaaccaaaatnnnnnnncaatctctcaactccgagaaatacttagttggacacaacaccaacacaatggacccgtggct |
116 |
Q |
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|||||||||||||||||||||||| |||||| || |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
36104725 |
catttatatcataacacactcaaatcaaaataaaaaaacactctctcaactccgagaaatacttagttggacaaaacaccaacacaatggacccgtggct |
36104824 |
T |
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| Q |
117 |
ggacgatctaaccgacgacctccagagcctaagctttgcctccacaacaaccaccactgtcaccaccgccgacatcaaacgcagtacaagcttcagttca |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36104825 |
cgacgatctaaccgacgacctccagagcctaagctttgcctccacaacaaccaccactgtcaccaccgccgacatcaaacgcagtacaagcttcagttca |
36104924 |
T |
|
| Q |
217 |
tcctcaacctctgctcatctctccggtcgatcccttccatttcctcctcctcctccaaccaccaccaaacatcacgctccttcctccgacccacgctggt |
316 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36104925 |
tcctcaacctccgctcatctctccggtcgatcccttccatttcctcctcctcctccaaccaccaccaaacatcacgctccttcctccgacccacgctggt |
36105024 |
T |
|
| Q |
317 |
cagccattcaccggatccaatccgaatccccttctcgtcgcatcctcccctccgacctccgcttctcccgccgtctctgctcc |
399 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| |
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| T |
36105025 |
cagccattcaccggatccaatccgaatccccttctcgtcgcatcctcccctccgacctccgcttctcccaccgtctcggctcc |
36105107 |
T |
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