View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1836_low_48 (Length: 409)
Name: NF1836_low_48
Description: NF1836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1836_low_48 |
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Alignment Details
Target: chr6 (Bit Score: 207; Significance: 1e-113; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 4 - 246
Target Start/End: Original strand, 1964176 - 1964418
Alignment:
| Q |
4 |
tgtctttgtcaactgatataagctcatagggacatctcataggtactactaatcatactcactaaaatttcatgaagttttattcaaaatgtgttttgta |
103 |
Q |
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| T |
1964176 |
tgtctttgtcaactgatataagctcggaggaacatctcatagatactactaatcatactccctaaaatttcatcaagttttattcaaaatatgttttgta |
1964275 |
T |
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| Q |
104 |
gccgcaaaacagttgtttgatattcaaccaaaaaggctccaatagaaatctaaatttctaataaagttcttattggattcaccttcaaagtgtttcacgc |
203 |
Q |
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| T |
1964276 |
gccgcaaaacagttgtttgatattcaaccaaaaaggctccaagagaaatctaaatttctaataaagttcttattggattcaccttcaaagtgtttcacgc |
1964375 |
T |
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| Q |
204 |
ggttgcggatgacaaagtgaaaaatggattataaattaggtaa |
246 |
Q |
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| T |
1964376 |
ggttgcggatgccaaagtgaaaaatggattataaattaggtaa |
1964418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 281 - 395
Target Start/End: Original strand, 1964866 - 1964980
Alignment:
| Q |
281 |
cacatcttaatggaacatatagaagaacttacgtgagtttaatttttagatgaaatgatattttgtcagatttttcttatattgcagtttatctcatggt |
380 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
1964866 |
cacatcttaatggaacatatagaagaacttacgtgagtttaatttttagatgaaatgatattttgtcagatttttcttatattgcagtctatctcatggt |
1964965 |
T |
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| Q |
381 |
tactatggtcccttt |
395 |
Q |
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| T |
1964966 |
tactatggtctcttt |
1964980 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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