View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1836_low_53 (Length: 382)
Name: NF1836_low_53
Description: NF1836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1836_low_53 |
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Alignment Details
Target: chr4 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 43 - 367
Target Start/End: Complemental strand, 35685604 - 35685280
Alignment:
| Q |
43 |
ttacaatttatttggccattatttcacttgattctattaggctcctacataaggaaccaacaaaatagcaacactggaacaccaataatcatataaatat |
142 |
Q |
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| T |
35685604 |
ttacaatttatttggcgattatttcacttgattctattaggctcctacataaggaaccaacaaaatagcaacactggaacaccaataatcatataaatat |
35685505 |
T |
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| Q |
143 |
tgtgaaaatgaatattaaaagggtcaacaatttttctctctgtcaatggacaaaaagtttttatcacaatattgacaatataaatgaaacgtcttagttc |
242 |
Q |
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| T |
35685504 |
tgtgaaaatgaatattaaaagggtcaacaatttttctctctgtcaatggacaaaaagtttttatcacaatattgacaatataaatgaaacgtcttagttc |
35685405 |
T |
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| Q |
243 |
cgacttcaaaattttgtataatgcaaagaggttagggttagaagataggaataatatattgcnnnnnnngcggtgtgcacatactataaatcatcataaa |
342 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| | ||| ||||||||||||||||||||||||| |
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| T |
35685404 |
cgacttcaaaattttgtataatgcaaagaggttagggttagaagataggaataatatgttgcaaaaaaagtggtatgcacatactataaatcatcataaa |
35685305 |
T |
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| Q |
343 |
aattgcaactctctctgtcaagaag |
367 |
Q |
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||||||||||||||||||||||||| |
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| T |
35685304 |
aattgcaactctctctgtcaagaag |
35685280 |
T |
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