View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1836_low_54 (Length: 382)
Name: NF1836_low_54
Description: NF1836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1836_low_54 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 27 - 364
Target Start/End: Complemental strand, 4776273 - 4775936
Alignment:
| Q |
27 |
ttctgctcacaacctaaacctgactccacatactgtgatagtaaggaatttcgcagtatacttggtgccttacattacctttcaatcacacgcccggaca |
126 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| |||||||||||||| |||||||||||||| ||||| |||| |
|
|
| T |
4776273 |
ttctgctcacaacctaaacccgactccacatactgtgacagtaaggaatttcgcagtatgcttggtgccttacactacctttcaatcactcgcccagaca |
4776174 |
T |
|
| Q |
127 |
tagcattcccggtgaataaactagcacaacaaatgcaagctcctactgtgacagatatgcaagccttaaatagagtattgcgctatctcaaatccaccat |
226 |
Q |
| |
|
| ||||| || ||||||||||||||| |||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| |
|
|
| T |
4776173 |
ttgcatttccagtgaataaactagcataacaaatgcaagctcctactgtgacagatatgcaagccttgaagagagtattgcgctatctcaaatccaccat |
4776074 |
T |
|
| Q |
227 |
ctccaatggactccatctcacaagatcttcaaatacaagcctcacaagcttttgtgatgcagattgggctggagacacaattgatcggaaatcgacaggt |
326 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||| |||||||||||||| ||||||| |||||| |
|
|
| T |
4776073 |
ctccaatggactccatctcacaagatcttcaaatacaaacctcacaagcttttgtgatgcagattaggcaggagacacaattgacaggaaatcaacaggt |
4775974 |
T |
|
| Q |
327 |
gcttatttaatttattttggccctaatattatctcttg |
364 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4775973 |
gcttatttaatttattttggccctaatattatctcttg |
4775936 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 72; Significance: 1e-32; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 261 - 364
Target Start/End: Complemental strand, 43061400 - 43061297
Alignment:
| Q |
261 |
acaagcctcacaagcttttgtgatgcagattgggctggagacacaattgatcggaaatcgacaggtgcttatttaatttattttggccctaatattatct |
360 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||| |||||||||||||| ||| || |||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
43061400 |
acaagcctcacaaacttttgtgatgcagattgggcaggagacacaattgacaggatatgaacaggtgcttatttcatttattttggccctaatattatct |
43061301 |
T |
|
| Q |
361 |
cttg |
364 |
Q |
| |
|
|||| |
|
|
| T |
43061300 |
cttg |
43061297 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University