View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1836_low_55 (Length: 382)
Name: NF1836_low_55
Description: NF1836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1836_low_55 |
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Alignment Details
Target: chr3 (Bit Score: 348; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 20 - 379
Target Start/End: Complemental strand, 52712836 - 52712477
Alignment:
| Q |
20 |
tgaggaagcttgcgagcgccaataatatcagagtgtgtggtctcaacctcgtagagagtaggctcattttctacggagactcctctttgatgtttcttga |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52712836 |
tgaggaagcttgcgagcgccaataatatcagagtgtgtggtctcaacctcgtagagagtaggctcattttctacggagactcctctttgatgtttcttga |
52712737 |
T |
|
| Q |
120 |
cggaggctacaataacctgaagaaacctagtaaaagggcttcccattgccttttggaaacggtaataccgaacaccggcagctagaacaacaatagataa |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
52712736 |
cggaggctacaataacctgaagaaacctagtaaaagggcttcccattggcttttggaaacggtaataccgaacaccggcagctagaacaacgatagataa |
52712637 |
T |
|
| Q |
220 |
aaccgtagttattgtgggaattccaaaaccccaaccccaccctagtttatcttgtgcataaaccaatatcgtgattccaagaagagcacccatgttgata |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52712636 |
aaccgtagttattgtgggaattccaaaaccccaaccccaccctagtttatcttgtgcataaaccaatatcgtgattccaagaagagcacccatgttgata |
52712537 |
T |
|
| Q |
320 |
gcaaagaaaaaccaattaaagaaagcgtatttcttttggacttctttttcatctcactcg |
379 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
52712536 |
gcaaagaaaaaccaattaaagaaagcgtatttcttttggacttctttttcatctccctcg |
52712477 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 20 - 379
Target Start/End: Complemental strand, 52721657 - 52721298
Alignment:
| Q |
20 |
tgaggaagcttgcgagcgccaataatatcagagtgtgtggtctcaacctcgtagagagtaggctcattttctacggagactcctctttgatgtttcttga |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| |||||| || |||||||||||| |
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| T |
52721657 |
tgaggaagcttgcgagcgccaataatatcagagtgtgtggtctcaacctcatagagagtaggttcattttctacggaaactccttttcgatgtttcttga |
52721558 |
T |
|
| Q |
120 |
cggaggctacaataacctgaagaaacctagtaaaagggcttcccattgccttttggaaacggtaataccgaacaccggcagctagaacaacaatagataa |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||| |||||||||| ||| |||||||| |
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| T |
52721557 |
cggaggctacaataacctgaagaaacctagtaaaagggcttcccattggcttttgaaaacggtaataccgaacaccagcagctagaagaacgatagataa |
52721458 |
T |
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| Q |
220 |
aaccgtagttattgtgggaattccaaaaccccaaccccaccctagtttatcttgtgcataaaccaatatcgtgattccaagaagagcacccatgttgata |
319 |
Q |
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|||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
52721457 |
aaccatagttattgtgggtattccaaaaccccaaccccaccctagtttatcttgtgcataaaccaatatcgtgattccaagaagagaacccatgttgata |
52721358 |
T |
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| Q |
320 |
gcaaagaaaaaccaattaaagaaagcgtatttcttttggacttctttttcatctcactcg |
379 |
Q |
| |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||| |
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| T |
52721357 |
gcaaagaaaaaccaattaaagaaagcgtatttctgttggacttctttttcatctccctcg |
52721298 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 23 - 379
Target Start/End: Complemental strand, 52699014 - 52698658
Alignment:
| Q |
23 |
ggaagcttgcgagcgccaataatatcagagtgtgtggtctcaacctcgtagagagtaggctcattttctacggagactcctctttgatgtttcttgacgg |
122 |
Q |
| |
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|||||||||||||| |||||||||||||||| |||||| |||||||| ||||||| || ||||||||||| |||||||||| | |||||||||| | | |
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| T |
52699014 |
ggaagcttgcgagcaccaataatatcagagtatgtggtttcaacctcatagagaggagtttcattttctactgagactcctcctcgatgtttctttatag |
52698915 |
T |
|
| Q |
123 |
aggctacaataacctgaagaaacctagtaaaagggcttcccattgccttttggaaacggtaataccgaacaccggcagctagaacaacaatagataaaac |
222 |
Q |
| |
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| |||||||||||||||||||||||||| || ||||||||||||| ||||| ||||| |||||| ||| ||| | || | | ||| ||||||| || |
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| T |
52698914 |
aagctacaataacctgaagaaacctagtgaatgggcttcccattggtttttgaaaacgataatacggaataccaacggccaagataacgatagatataat |
52698815 |
T |
|
| Q |
223 |
cgtagttattgtgggaattccaaaaccccaaccccaccctagtttatcttgtgcataaaccaatatcgtgattccaagaagagcacccatgttgatagca |
322 |
Q |
| |
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||||||||||||||| | | |||||||||||| |||||||| || | |||| ||||||||||| || ||||||||||| |||||||||||||| ||| |
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| T |
52698814 |
cgtagttattgtgggtaatgcaaaaccccaactccaccctacttggttttgtaaataaaccaatagtgtaattccaagaagggcacccatgttgatggca |
52698715 |
T |
|
| Q |
323 |
aagaaaaaccaattaaagaaagcgtatttcttttggacttctttttcatctcactcg |
379 |
Q |
| |
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||| |||||||||||||||||| | ||||| ||||||||||||||||||||| |||| |
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| T |
52698714 |
aagtaaaaccaattaaagaaagagaatttcatttggacttctttttcatctccctcg |
52698658 |
T |
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