View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1836_low_56 (Length: 373)
Name: NF1836_low_56
Description: NF1836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1836_low_56 |
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Alignment Details
Target: chr4 (Bit Score: 165; Significance: 4e-88; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 177 - 365
Target Start/End: Complemental strand, 49779980 - 49779792
Alignment:
| Q |
177 |
aaattttaaatccaagaaatcaaattttaaatctatacttcgagaattgtctcatcttgattgatggaacgatccaaattactttacataatattttcag |
276 |
Q |
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| T |
49779980 |
aaattttaaatccaagaaatcaaattttaaatctatacttcgagaattgtctcatcttgattgatggaacgatccaaattacttgacataaaattttcag |
49779881 |
T |
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| Q |
277 |
actgcatgagagcgtaatcccaaatgttcatacaaataagcacttatggtattgtagctgtaggtcatatcaatggtaaaacctatgtt |
365 |
Q |
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| T |
49779880 |
actgcatgaaatcgtaatcccaaattttcatacaaataagcacttatggtattgtagctttaggtcatatcaatggtaaaacctatgtt |
49779792 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 6 - 179
Target Start/End: Complemental strand, 49788451 - 49788278
Alignment:
| Q |
6 |
acaatgtcactggtgtatgacaaaccatgtacttttaattcatttattgacaacatatataaattaaactcataatataaatttccttcgattatacaag |
105 |
Q |
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| T |
49788451 |
acaatgttagtggtgtatgacaaaccatgtacttttaattcatttattgacaacatatataaattaaactcataatataaatttccttcgattatacaag |
49788352 |
T |
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| Q |
106 |
cctgtttattccattttcactaaaatgttcaaatatagatctcttgatgtcaaggatccacacactgaagtaaa |
179 |
Q |
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| T |
49788351 |
cctgtttattccatttttactaaaatgttcaaatatagatctcttgatgtcaaggatccacacattgaagtaaa |
49788278 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 21 - 81
Target Start/End: Original strand, 7984976 - 7985036
Alignment:
| Q |
21 |
tatgacaaaccatgtacttttaattcatttattgacaacatatataaattaaactcataat |
81 |
Q |
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| T |
7984976 |
tatgacaaatcatgtgtttttaattcattaattgacaatgtatataaattaacctcataat |
7985036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 177 - 211
Target Start/End: Original strand, 7988377 - 7988411
Alignment:
| Q |
177 |
aaattttaaatccaagaaatcaaattttaaatcta |
211 |
Q |
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| T |
7988377 |
aaattttaaattcaagaaatcaaattttaaatcta |
7988411 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 90 - 142
Target Start/End: Original strand, 7985496 - 7985548
Alignment:
| Q |
90 |
ccttcgattatacaagcctgtttattccattttcactaaaatgttcaaatata |
142 |
Q |
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| T |
7985496 |
ccttggattataaaagtctgcttattccactttcaccaaaatgttcaaatata |
7985548 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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