View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1836_low_58 (Length: 355)
Name: NF1836_low_58
Description: NF1836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1836_low_58 |
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Alignment Details
Target: chr8 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 12 - 301
Target Start/End: Original strand, 26753202 - 26753491
Alignment:
| Q |
12 |
attattctcgatatttatatagattaaaactcatttaagataataaatgtcggtcggtttgattcaacggaggagatgatcgaaatattaaccgagcgga |
111 |
Q |
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| T |
26753202 |
attattctcgatatttatatagattaaaactcatttaagataataaaggtcggtcggtttgattcaacggaggagatgatcgaaatattaaccgagcgga |
26753301 |
T |
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| Q |
112 |
ggaaaagagaaggaagacaagaggaattaatttaaatgaatatacatgtctggttcaaaagatgggagtggaagggaggggagatatttgaatgaagtgt |
211 |
Q |
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| T |
26753302 |
ggaaaagagaaggaagacaagaggaattaatttaaatgaatatacatgtctggttcaaaagatgggagtggaagggaggggagatatttgaatgaagtgt |
26753401 |
T |
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| Q |
212 |
gaagacagtgatgcccacatagtttggttgaatatgtacccctcatccgatcaatccatgctatgtcatattttcatattgatttatttt |
301 |
Q |
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| T |
26753402 |
gaagacaatgatgtccaaatagtttggttgaatatgtatccctcatctgatcaatccatgctatgtcatattttcatattgatttatttt |
26753491 |
T |
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Target: chr1 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 231 - 301
Target Start/End: Complemental strand, 46073329 - 46073259
Alignment:
| Q |
231 |
tagtttggttgaatatgtacccctcatccgatcaatccatgctatgtcatattttcatattgatttatttt |
301 |
Q |
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| T |
46073329 |
tagtttggttgggtatgtacccctcatccaatcaatcaatgccatatcctattttcatattaatttatttt |
46073259 |
T |
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