View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1836_low_59 (Length: 354)
Name: NF1836_low_59
Description: NF1836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1836_low_59 |
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Alignment Details
Target: chr6 (Bit Score: 304; Significance: 1e-171; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 1 - 346
Target Start/End: Original strand, 17433188 - 17433535
Alignment:
| Q |
1 |
atactctgtatacaactatagaaactaatatcttgtgtcgggtagaaccataatgattggtaaaactctcactc--gagagcgcaaaatcatgattgatt |
98 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
17433188 |
atactctgcgtacaactatagaaactaatatcttgtgtcgggtagaaccataatgattggtaaaactctcactcaagagagcgcaaaatcatgattgatt |
17433287 |
T |
|
| Q |
99 |
agaccctttcatacttactttttaataaagttgtgccaatnnnnnnntgatatctaatccaagtatttaagaatgatttttaatttatactatatgtaac |
198 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
17433288 |
agaccctttcatacttactttttaataaagttgtgccaataaaaaaatgatatctaatccaggtatttaagaatgatttttaatttatactatatgtaac |
17433387 |
T |
|
| Q |
199 |
tattgcaaattacctgtccgtatagagttgatccagttccacctgaatgttgatgagcaacagcatagatcacatatccaccagtttgtagtgggagact |
298 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17433388 |
tattgcaaattacctgtccgtatagagttgatccagttccacctgaatgttgatgagcaacagcatagatcacatatccaccagtttgtagtgggagact |
17433487 |
T |
|
| Q |
299 |
tgtcctcttcacatgaacacaaccattttcctcctcatggtctctgct |
346 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
17433488 |
tgtcctcttcacatgaacacaaccattttcctcctcatggtctctgct |
17433535 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 13 - 346
Target Start/End: Original strand, 17454290 - 17454614
Alignment:
| Q |
13 |
caactatagaaactaatatcttgtgtcgggtagaaccataatgattggtaaaactctcactc--gagagcgcaaaatcatgattgattagaccctttcat |
110 |
Q |
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||||| ||||||||||| | ||| ||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||| ||| |
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|
| T |
17454290 |
caactgtagaaactaatgttttgagtcggatagaaccataatgattggtaaaactctcactcaagagagcgcaaaatcatgattgattagacgcttccat |
17454389 |
T |
|
| Q |
111 |
acttactttttaataaagttgtgccaatnnnnnnntgatatctaatccaagtatttaagaatgatttttaatttatactatatgtaactattgcaaatta |
210 |
Q |
| |
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| ||| ||||||||||||| |||| | | |||||| || ||||||||||||| | ||||||||||||||||||||||||||||||| |
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| T |
17454390 |
aattattttttaataaagtcgtgcgactaaaaaa-tgatattta---------tttaagaatgattgt-aatttatactatatgtaactattgcaaatta |
17454478 |
T |
|
| Q |
211 |
cctgtccgtatagagttgatccagttccacctgaatgttgatgagcaacagcatagatcacatatccaccagtttgtagtgggagacttgtcctcttcac |
310 |
Q |
| |
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||||||| |||| |||||||||| ||| ||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| |
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| T |
17454479 |
cctgtccatataaagttgatccaactccccctgaatgttgatgagcaacagcatagatcacatagccaccagtttgcagtgggagacttgtcctcttcac |
17454578 |
T |
|
| Q |
311 |
atgaacacaaccattttcctcctcatggtctctgct |
346 |
Q |
| |
|
|||||||||||||||| |||||||||||||| |||| |
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|
| T |
17454579 |
atgaacacaaccatttccctcctcatggtctgtgct |
17454614 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 99; Significance: 8e-49; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 200 - 326
Target Start/End: Original strand, 38226372 - 38226498
Alignment:
| Q |
200 |
attgcaaattacctgtccgtatagagttgatccagttccacctgaatgttgatgagcaacagcatagatcacatatccaccagtttgtagtgggagactt |
299 |
Q |
| |
|
|||| |||||||||| |||||||||||||||||| ||||||||||||| |||||||||||| ||||||||||||| |||||||||||||||||||||||| |
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| T |
38226372 |
attgtaaattacctgcccgtatagagttgatccaattccacctgaatgctgatgagcaacaccatagatcacatagccaccagtttgtagtgggagactt |
38226471 |
T |
|
| Q |
300 |
gtcctcttcacatgaacacaaccattt |
326 |
Q |
| |
|
||||||||||||| ||||||||||||| |
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|
| T |
38226472 |
gtcctcttcacatcaacacaaccattt |
38226498 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 193 - 326
Target Start/End: Original strand, 38213986 - 38214119
Alignment:
| Q |
193 |
tgtaactattgcaaattacctgtccgtatagagttgatccagttccacctgaatgttgatgagcaacagcatagatcacatatccaccagtttgtagtgg |
292 |
Q |
| |
|
||||| ||||||||||||||||||| ||||||||||||||| |||| |||||||| ||||||||||||||||||| ||||| ||||||||||||||||| |
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|
| T |
38213986 |
tgtaagtattgcaaattacctgtccatatagagttgatccaattccgcctgaatgctgatgagcaacagcatagacaacatagccaccagtttgtagtgg |
38214085 |
T |
|
| Q |
293 |
gagacttgtcctcttcacatgaacacaaccattt |
326 |
Q |
| |
|
||||||||||||| |||||||||||||||||||| |
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|
| T |
38214086 |
gagacttgtcctcatcacatgaacacaaccattt |
38214119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 195 - 346
Target Start/End: Original strand, 38242881 - 38243032
Alignment:
| Q |
195 |
taactattgcaaattacctgtccgtatagagttgatccagttccacctgaatgttgatgagcaacagcatagatcacatatccaccagtttgtagtggga |
294 |
Q |
| |
|
||||||||| ||||||||||||| ||||| || |||||| ||||||||||||| ||||| |||||| ||||||||||||||||||||||||| | ||||| |
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|
| T |
38242881 |
taactattggaaattacctgtccatatagggtggatccaattccacctgaatgctgatgtgcaacaccatagatcacatatccaccagtttgaaatggga |
38242980 |
T |
|
| Q |
295 |
gacttgtcctcttcacatgaacacaaccattttcctcctcatggtctctgct |
346 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||| ||||||| |||| |
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|
| T |
38242981 |
gacttgtcctcttcacatgaacacacccattttcctccctatggtctgtgct |
38243032 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 197 - 333
Target Start/End: Original strand, 38253236 - 38253372
Alignment:
| Q |
197 |
actattgcaaattacctgtccgtatagagttgatccagttccacctgaatgttgatgagcaacagcatagatcacatatccaccagtttgtagtgggaga |
296 |
Q |
| |
|
||||||||||||||||||||| |||| ||||||||| ||||||||||||| |||||||||||| ||||||||||||| ||||| ||||||||||||||| |
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| T |
38253236 |
actattgcaaattacctgtccaaatagggttgatccaattccacctgaatgctgatgagcaacaccatagatcacatagccaccggtttgtagtgggaga |
38253335 |
T |
|
| Q |
297 |
cttgtcctcttcacatgaacacaaccattttcctcct |
333 |
Q |
| |
|
|||||||| || ||||||||||| |||||| |||||| |
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|
| T |
38253336 |
cttgtcctttttacatgaacacacccatttccctcct |
38253372 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 191 - 339
Target Start/End: Original strand, 38220022 - 38220170
Alignment:
| Q |
191 |
tatgtaactattgcaaattacctgtccgtatagagttgatccagttccacctgaatgttgatgagcaacagcatagatcacatatccaccagtttgtagt |
290 |
Q |
| |
|
||||||||||||| ||||||||||||| ||||| || ||||| ||||||| ||||||||||| |||||| ||||||||||||| ||||||||||| | | |
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|
| T |
38220022 |
tatgtaactattggaaattacctgtccatatagggtggatccgattccacccgaatgttgatgtgcaacaccatagatcacataaccaccagtttgaaat |
38220121 |
T |
|
| Q |
291 |
gggagacttgtcctcttcacatgaacacaaccattttcctcctcatggt |
339 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||| | |||| ||||| |
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|
| T |
38220122 |
gggagacttatcctcttcacatgaacacaaccatttccatccttatggt |
38220170 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 208 - 346
Target Start/End: Original strand, 38237919 - 38238057
Alignment:
| Q |
208 |
ttacctgtccgtatagagttgatccagttccacctgaatgttgatgagcaacagcatagatcacatatccaccagtttgtagtgggagacttgtcctctt |
307 |
Q |
| |
|
|||||||||| ||||||||||||||| |||| |||||||||||||||||| || ||||||||| ||| ||||||||||| | |||||||||||||||||| |
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|
| T |
38237919 |
ttacctgtccatatagagttgatccaattccgcctgaatgttgatgagcagcaccatagatcatatagccaccagtttgaaatgggagacttgtcctctt |
38238018 |
T |
|
| Q |
308 |
cacatgaacacaaccattttcctcctcatggtctctgct |
346 |
Q |
| |
|
|||||||||||| |||| |||||| ||||||| |||| |
|
|
| T |
38238019 |
cacatgaacacaggaatttccctccttatggtctgtgct |
38238057 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 279 - 333
Target Start/End: Original strand, 38248165 - 38248219
Alignment:
| Q |
279 |
ccagtttgtagtgggagacttgtcctcttcacatgaacacaaccattttcctcct |
333 |
Q |
| |
|
|||| ||||||||||||||||||||| |||||||||||||| |||||| |||||| |
|
|
| T |
38248165 |
ccagattgtagtgggagacttgtccttttcacatgaacacacccatttccctcct |
38248219 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 210 - 321
Target Start/End: Complemental strand, 11473615 - 11473504
Alignment:
| Q |
210 |
acctgtccgtatagagttgatccagttccacctgaatgttgatgagcaacagcatagatcacatatccaccagtttgtagtgggagacttgtcctcttca |
309 |
Q |
| |
|
|||| ||| ||||||||||||||| || ||||||||||||||||| |||| ||||||| | ||| |||||| |||| | ||||| ||||| ||||| | |
|
|
| T |
11473615 |
acctttccatatagagttgatccaattgcacctgaatgttgatgaccaactccatagatgagataaccaccattttgcattgggaagcttgttctcttga |
11473516 |
T |
|
| Q |
310 |
catgaacacaac |
321 |
Q |
| |
|
||| ||||||| |
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|
| T |
11473515 |
catcgacacaac |
11473504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 210 - 323
Target Start/End: Complemental strand, 11485886 - 11485773
Alignment:
| Q |
210 |
acctgtccgtatagagttgatccagttccacctgaatgttgatgagcaacagcatagatcacatatccaccagtttgtagtgggagacttgtcctcttca |
309 |
Q |
| |
|
|||| ||| ||||||||||||||| || |||||||||| |||||| |||| ||||||| ||||| |||||| |||| | ||||| |||| || || | |
|
|
| T |
11485886 |
acctttccatatagagttgatccaattgcacctgaatgctgatgaccaactccatagatgacataaccaccattttgcattgggaagcttgctcttttga |
11485787 |
T |
|
| Q |
310 |
catgaacacaacca |
323 |
Q |
| |
|
||| |||||||||| |
|
|
| T |
11485786 |
catcaacacaacca |
11485773 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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