View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1836_low_6 (Length: 733)

Name: NF1836_low_6
Description: NF1836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1836_low_6
NF1836_low_6
[»] chr2 (5 HSPs)
chr2 (18-721)||(13447558-13448260)
chr2 (290-721)||(13454315-13454731)
chr2 (543-721)||(13439919-13440097)
chr2 (435-543)||(13439829-13439937)
chr2 (203-266)||(13454185-13454249)
[»] chr5 (2 HSPs)
chr5 (544-721)||(28385054-28385231)
chr5 (552-719)||(12540413-12540580)
[»] chr4 (5 HSPs)
chr4 (545-714)||(48965050-48965219)
chr4 (544-718)||(48967178-48967352)
chr4 (544-708)||(48961011-48961175)
chr4 (556-715)||(48957876-48958035)
chr4 (602-689)||(48912659-48912746)
[»] chr8 (1 HSPs)
chr8 (543-713)||(12641771-12641941)
[»] chr7 (1 HSPs)
chr7 (555-721)||(3417809-3417975)
[»] chr6 (1 HSPs)
chr6 (578-717)||(12590455-12590594)
[»] scaffold0536 (1 HSPs)
scaffold0536 (662-714)||(6800-6852)


Alignment Details
Target: chr2 (Bit Score: 620; Significance: 0; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 620; E-Value: 0
Query Start/End: Original strand, 18 - 721
Target Start/End: Original strand, 13447558 - 13448260
Alignment:
Q  18 atgtatagcgaatgaaacaaattaggggctaatcttcggtcnnnnnnnnnnnnnnnngacaggatcccacaaaatctagagatttaaagtacagaaacca 117  Q
    |||||||||||||||||||||||||||||||||||||||||                ||||||||||||||||||||||||||||||||||||| |||||    
T  13447558 atgtatagcgaatgaaacaaattaggggctaatcttcggtcaaaagaaaaagaaacagacaggatcccacaaaatctagagatttaaagtacaggaacca 13447657  T
Q  118 gctttacaggattcttccatttcattcgactgtaaacaacagcaatgtcagactgacagaagtgttgacataaacactctcgcagttgaaaaattaaaat 217  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13447658 gctttacaggattcttccatttcattcgactgtaaacaacggcaatgtcagactgacagaagtgttgacataaacactctcgcagttgaaaaattaaaat 13447757  T
Q  218 aaatgcaaaaacacattaagaagttagaatagccacgtacacaccaaaaattgaatcaaaacaattaagtttaaactattcgaaaattcatgttaaatct 317  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||    
T  13447758 aaatgcaaaaacacattaagaagttagaatagccacgtacacaccaaaaattgaatcaaaacaattaagga-aaactattcgaaaattcatgttaaatct 13447856  T
Q  318 gccagagtagctaaatgttacttcattgatttgagagtacttgtggcaggtattgtggaatcaaaatcccaaaaagagaaaacaagtcacttgaattcat 417  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  13447857 gccagagtagctaaatgttacttcattgatttgagagtacttgtggcaggtattgtggaatcaaaatccaaaaaagagaaaacaagtcacttgaattcat 13447956  T
Q  418 agaaaaaatccaaaacattcacacttccgcttgacgaaaccacgatgttattaggaaaagttgaaaaaatttagacaatactcatttgaattaatcatcc 517  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13447957 agaaaaaatccaaaacattcacacttccgcttgacgaaaccacgatgttattaggaaaagttgaaaaaatttagacaatactcatttgaattaatcatcc 13448056  T
Q  518 agcttgaggtctctcaatcttttaaggtctctcgatcttttaagttcgtcaatcaaagccaacaaattattataagacgagcccccttcttgaatagctt 617  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  13448057 agcttgaggtctctcaatcttttaaggtctctcgatcttttaagttcgtcaatcaaagccaacaaattattataagacgagccaccttcttgaatagctt 13448156  T
Q  618 gtatagctttttctccaaactctcgagcatgtagcctgatattttcagcttcatcaccaccgtccatcaatctccttacagccttctctatgctatctct 717  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13448157 gtatagctttttctccaaactctcgagcacgtagcctgatattttcagcttcatcaccaccgtccatcaatctccttacagccttctctatgctatctct 13448256  T
Q  718 gctc 721  Q
    ||||    
T  13448257 gctc 13448260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 165; E-Value: 7e-88
Query Start/End: Original strand, 290 - 721
Target Start/End: Original strand, 13454315 - 13454731
Alignment:
Q  290 aaactattcgaaaattcatgttaaatctgccagagtagctaaat-gttacttcattgatttgagagtacttgtggcaggtattgtggaatcaaaatccca 388  Q
    ||||||||| ||||||||| ||||||||||||  ||||||| || ||| |||||||||||||||||||||||| |||| |||||| |||||||||||| |    
T  13454315 aaactattcaaaaattcatattaaatctgccatggtagctatattgttgcttcattgatttgagagtacttgtcgcagatattgtagaatcaaaatccaa 13454414  T
Q  389 aaaagagaaaacaagtcacttgaattcatagaaaaaatccaaa--acattcacacttccgcttgacgaaaccacgatgttattaggaaaagttgaaaaaa 486  Q
    |||| | ||||  | || |||||||||||    ||||| || |  |||  || ||||| |||||||||||| || |||||||||| ||||||||||||||    
T  13454415 aaaacataaaaggaatcgcttgaattcatgtgcaaaattcatataacacacatacttctgcttgacgaaacaacaatgttattagaaaaagttgaaaaaa 13454514  T
Q  487 tttagacaatactcatttgaattaatcatccagcttgaggtctctcaatcttttaaggtctctcgatcttttaagttcgtcaatcaaagccaacaaatta 586  Q
     ||| ||||| ||| |||||||||||||| | ||||||||| |||||||||                  ||||||||| |||||||||||||||||||||    
T  13454515 cttacacaatgctcctttgaattaatcatgcggcttgaggtttctcaatct------------------tttaagttcatcaatcaaagccaacaaatta 13454596  T
Q  587 ttataagacgagcccccttcttgaatagcttgtatagctttttctccaaactctcgagcatgtagcctgatattttcagcttcatcaccaccgtccatca 686  Q
    |||||||| ||||| |||| ||||||||||||| |||| ||||||||||||||||||||| ||| ||||||||||| |||||||||||||||| ||||||    
T  13454597 ttataagatgagccacctttttgaatagcttgtgtagccttttctccaaactctcgagcacgtaccctgatatttttagcttcatcaccaccgcccatca 13454696  T
Q  687 atctccttacagccttctctatgctatctctgctc 721  Q
    ||||||| ||||||||||||||||||||| |||||    
T  13454697 atctcctcacagccttctctatgctatctttgctc 13454731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 115; E-Value: 5e-58
Query Start/End: Original strand, 543 - 721
Target Start/End: Original strand, 13439919 - 13440097
Alignment:
Q  543 ggtctctcgatcttttaagttcgtcaatcaaagccaacaaattattataagacgagcccccttcttgaatagcttgtatagctttttctccaaactctcg 642  Q
    |||||||| ||||||||||||| ||||| ||||||||||||||||||||||||||||| |||||||||||||||||| |||| ||||||||||||||| |    
T  13439919 ggtctctcaatcttttaagttcttcaattaaagccaacaaattattataagacgagccaccttcttgaatagcttgtgtagccttttctccaaactcttg 13440018  T
Q  643 agcatgtagcctgatattttcagcttcatcaccaccgtccatcaatctccttacagccttctctatgctatctctgctc 721  Q
    |||| ||||||| ||||||| |||||||||||||   |||||||||||||| ||||||||||||||| |||| ||||||    
T  13440019 agcaagtagcctcatatttttagcttcatcaccattctccatcaatctcctcacagccttctctatgttatccctgctc 13440097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 435 - 543
Target Start/End: Original strand, 13439829 - 13439937
Alignment:
Q  435 ttcacacttccgcttgacgaaaccacgatgttattaggaaaagttgaaaaaatttagacaatactcatttgaattaatcatccagcttgaggtctctcaa 534  Q
    |||||||||| |||||||||| | || || ||||||||| | ||||||||||  ||||||||| || ||||||||||||||   ||||| ||||||||||    
T  13439829 ttcacacttctgcttgacgaaccaacaatattattaggataggttgaaaaaacatagacaatagtcctttgaattaatcatgtcgcttggggtctctcaa 13439928  T
Q  535 tcttttaag 543  Q
    |||||||||    
T  13439929 tcttttaag 13439937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 203 - 266
Target Start/End: Original strand, 13454185 - 13454249
Alignment:
Q  203 ttgaaaaatt-aaaataaatgcaaaaacacattaagaagttagaatagccacgtacacaccaaaa 266  Q
    |||||||||| ||||||||||| |||||||||||||||||||||| | ||||||||||| |||||    
T  13454185 ttgaaaaattgaaaataaatgcgaaaacacattaagaagttagaagaaccacgtacacaacaaaa 13454249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 86; Significance: 1e-40; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 544 - 721
Target Start/End: Original strand, 28385054 - 28385231
Alignment:
Q  544 gtctctcgatcttttaagttcgtcaatcaaagccaacaaattattataagacgagcccccttcttgaatagcttgtatagctttttctccaaactctcga 643  Q
    ||||||| |||||||||||||||| || ||||| ||||||||||||||||| || || ||||||| || |||| || |||| || ||||| |||||||||    
T  28385054 gtctctcaatcttttaagttcgtcgattaaagctaacaaattattataagaggaaccaccttctttaacagctcgtgtagccttctctcctaactctcga 28385153  T
Q  644 gcatgtagcctgatattttcagcttcatcaccaccgtccatcaatctccttacagccttctctatgctatctctgctc 721  Q
    ||| || | || ||||||||||||||||| ||||||||||||||| |||| | ||||||||||||| |||||||||||    
T  28385154 gcacgttgtctcatattttcagcttcatcgccaccgtccatcaatttcctcatagccttctctatgttatctctgctc 28385231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 552 - 719
Target Start/End: Original strand, 12540413 - 12540580
Alignment:
Q  552 atcttttaagttcgtcaatcaaagccaacaaattattataagacgagcccccttcttgaatagcttgtatagctttttctccaaactctcgagcatgtag 651  Q
    ||||||||| |||||| |||||||  ||||||||||||| ||| || || |||||||||| |||| || |||| || ||||||| |||||| ||| ||||    
T  12540413 atcttttaatttcgtcgatcaaagataacaaattattatgagaggaaccaccttcttgaacagctcgtctagccttctctccaatctctcgtgcacgtag 12540512  T
Q  652 cctgatattttcagcttcatcaccaccgtccatcaatctccttacagccttctctatgctatctctgc 719  Q
     || |||||||||||||||| |||||| |||||||||||||| | |||||||||||||| ||||||||    
T  12540513 tctcatattttcagcttcataaccaccatccatcaatctcctcatagccttctctatgccatctctgc 12540580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 74; Significance: 1e-33; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 545 - 714
Target Start/End: Original strand, 48965050 - 48965219
Alignment:
Q  545 tctctcgatcttttaagttcgtcaatcaaagccaacaaattattataagacgagcccccttcttgaatagcttgtatagctttttctccaaactctcgag 644  Q
    |||||| ||||||| || || |||||||| || |||||||| |||| ||||||||| ||||||||||| ||| || |||| ||||||||||||||| |||    
T  48965050 tctctcaatcttttgagatcatcaatcaaggctaacaaattcttatgagacgagccaccttcttgaatggctcgtctagccttttctccaaactcttgag 48965149  T
Q  645 catgtagcctgatattttcagcttcatcaccaccgtccatcaatctccttacagccttctctatgctatc 714  Q
    || |    || || || |||||||||||||||| ||||||||||||||| ||||||||||||||||||||    
T  48965150 cacgacttctaattttctcagcttcatcaccactgtccatcaatctcctcacagccttctctatgctatc 48965219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 544 - 718
Target Start/End: Original strand, 48967178 - 48967352
Alignment:
Q  544 gtctctcgatcttttaagttcgtcaatcaaagccaacaaattattataagacgagcccccttcttgaatagcttgtatagctttttctccaaactctcga 643  Q
    |||||||  ||||||||| || ||||||||||| |  ||||||||||||||| |||| ||||||||||  ||| || |||| ||||||||||| ||||||    
T  48967178 gtctctcattcttttaagatcatcaatcaaagcaagtaaattattataagacaagccaccttcttgaagtgctcgtgtagccttttctccaaagtctcga 48967277  T
Q  644 gcatgtagcctgatattttcagcttcatcaccaccgtccatcaatctccttacagccttctctatgctatctctg 718  Q
    ||| || | ||||| || |||||||||||  ||  |||||||||||| |||| ||| ||||||||| ||||||||    
T  48967278 gcacgttgtctgatcttctcagcttcatcgtcattgtccatcaatcttcttatagctttctctatgttatctctg 48967352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 544 - 708
Target Start/End: Original strand, 48961011 - 48961175
Alignment:
Q  544 gtctctcgatcttttaagttcgtcaatcaaagccaacaaattattataagacgagcccccttcttgaatagcttgtatagctttttctccaaactctcga 643  Q
    ||||||| |||||||||| || ||||| ||||||||||||||||||| ||| ||||| ||| |||||| ||||  |||||| || || ||||||||||||    
T  48961011 gtctctcaatcttttaagatcatcaattaaagccaacaaattattatgagatgagccgcctacttgaacagctcatatagccttatccccaaactctcga 48961110  T
Q  644 gcatgtagcctgatattttcagcttcatcaccaccgtccatcaatctccttacagccttctctat 708  Q
    ||| |  | || |||| ||| |||||||||||||||||||| ||| | || || |||||||||||    
T  48961111 gcacgccgtcttatatcttcggcttcatcaccaccgtccattaattttctcactgccttctctat 48961175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 556 - 715
Target Start/End: Original strand, 48957876 - 48958035
Alignment:
Q  556 tttaagttcgtcaatcaaagccaacaaattattataagacgagcccccttcttgaatagcttgtatagctttttctccaaactctcgagcatgtagcctg 655  Q
    |||||| || |||||||||| ||||||||| |||| ||| || || |||||||||| |||| || |||| |||||||| |||||| ||||| |  |  ||    
T  48957876 tttaagatcatcaatcaaagacaacaaattgttatgagatgatccaccttcttgaacagctcgtgtagccttttctccgaactcttgagcacgctgtttg 48957975  T
Q  656 atattttcagcttcatcaccaccgtccatcaatctccttacagccttctctatgctatct 715  Q
    || |  |||||||||||||||||||||||||||||| | |||||||| ||||| ||||||    
T  48957976 atttcctcagcttcatcaccaccgtccatcaatctcttcacagccttttctatactatct 48958035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 602 - 689
Target Start/End: Complemental strand, 48912746 - 48912659
Alignment:
Q  602 ccttcttgaatagcttgtatagctttttctccaaactctcgagcatgtagcctgatattttcagcttcatcaccaccgtccatcaatc 689  Q
    ||||||| ||| || ||| ||||||| || |||||||||||||||||| | ||||| || |||||||||||||||| |||||||||||    
T  48912746 ccttctttaattgcatgtttagctttctccccaaactctcgagcatgttgtctgattttctcagcttcatcaccactgtccatcaatc 48912659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 71; Significance: 9e-32; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 71; E-Value: 9e-32
Query Start/End: Original strand, 543 - 713
Target Start/End: Complemental strand, 12641941 - 12641771
Alignment:
Q  543 ggtctctcgatcttttaagttcgtcaatcaaagccaacaaattattataagacgagcccccttcttgaatagcttgtatagctttttctccaaactctcg 642  Q
    ||||||||||||||||||| |||| |||||||||||||||||| |||| |||||| || ||||||| || ||| ||| |||| ||||  ||||||||| |    
T  12641941 ggtctctcgatcttttaagatcgttaatcaaagccaacaaattgttatgagacgacccgccttcttcaacagcatgtgtagcctttttcccaaactcttg 12641842  T
Q  643 agcatgtagcctgatattttcagcttcatcaccaccgtccatcaatctccttacagccttctctatgctat 713  Q
    |||| || | ||||| |  | ||||||||||||| |||||||||||||||| ||||| |||||||| ||||    
T  12641841 agcacgttgtctgatttccttagcttcatcaccatcgtccatcaatctcctcacagctttctctatactat 12641771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 59; Significance: 1e-24; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 555 - 721
Target Start/End: Complemental strand, 3417975 - 3417809
Alignment:
Q  555 ttttaagttcgtcaatcaaagccaacaaattattataagacgagcccccttcttgaatagcttgtatagctttttctccaaactctcgagcatgtagcct 654  Q
    ||||||||||||| |||||||  |||||||||| ||  || || || ||||||||||||||| || |||| || ||||||| |||||||||| |||| ||    
T  3417975 ttttaagttcgtcgatcaaagttaacaaattatgatgtgaggaaccaccttcttgaatagctcgtttagccttctctccaagctctcgagcacgtagtct 3417876  T
Q  655 gatattttcagcttcatcaccaccgtccatcaatctccttacagccttctctatgctatctctgctc 721  Q
     |||  |||||| ||||||| || ||||||||||||||| |  ||||||||||||  ||||||||||    
T  3417875 cataccttcagcctcatcactactgtccatcaatctcctcattgccttctctatgtcatctctgctc 3417809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000007; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 578 - 717
Target Start/End: Complemental strand, 12590594 - 12590455
Alignment:
Q  578 aacaaattattataagacgagcccccttcttgaatagcttgtatagctttttctccaaactctcgagcatgtagcctgatattttcagcttcatcaccac 677  Q
    ||||||||||||| ||| ||||| |||| ||||| |||| || |||||||||| || |||||| ||  | || | ||||| |  |||||||||   ||||    
T  12590594 aacaaattattattagaggagccaccttgttgaacagctagtctagctttttcccctaactcttgactacgtcgtctgatttcctcagcttcaatgccac 12590495  T
Q  678 cgtccatcaatctccttacagccttctctatgctatctct 717  Q
    | ||||||||||| || ||||| |||| ||||||||||||    
T  12590494 catccatcaatcttctcacagcattctttatgctatctct 12590455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0536 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0536
Description:

Target: scaffold0536; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 662 - 714
Target Start/End: Complemental strand, 6852 - 6800
Alignment:
Q  662 tcagcttcatcaccaccgtccatcaatctccttacagccttctctatgctatc 714  Q
    |||||||| |||||||| |||||||||||||| ||||||||||| || |||||    
T  6852 tcagcttcgtcaccaccatccatcaatctcctcacagccttctcaatactatc 6800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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