View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1836_low_61 (Length: 343)
Name: NF1836_low_61
Description: NF1836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1836_low_61 |
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| [»] chr4 (1 HSPs) |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 335; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 1 - 343
Target Start/End: Complemental strand, 42313465 - 42313123
Alignment:
| Q |
1 |
ttgcgaaaaatctccctccatcagagatggtagaatcgtgctttgttgccggttctggatatgtgaatatcgtcttatcaaagaagtggatagcacaggt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42313465 |
ttgcgaaaaatctccctccatcagagatggtagaatcgtgctttgttgccggttctggatatgtgaatatcgtcttatcaaagaagtggatagcacaggt |
42313366 |
T |
|
| Q |
101 |
gattgattgtatttccattcttagttttaaattaaaatttatacatgtctccaaatttctaggccactatctgaattgtagcatgtgttgtttggaattg |
200 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42313365 |
gattgattgtatttccattcgtagttttaaattaaaatttatacatgtctccaaatttctaggccactatctgaattgtagcatgtgttgtttggaattg |
42313266 |
T |
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| Q |
201 |
gattatgctcttaacatgaaatgtctttgatctcttgcagagcttacagaagatgctcacttgtggtattcattcatgggctcctcgacttcctgtcaag |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
42313265 |
gattatgctcttaacatgaaatgtctttgatctcttgcagagcttacagaagatgctcacttctggtattcattcatgggctcctcgacttcctgtcaag |
42313166 |
T |
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| Q |
301 |
aggattctggttgacttttcctcgcctaatatagcaaaagaaa |
343 |
Q |
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| T |
42313165 |
aggattctggttgacttttcctcgcctaatatagcaaaagaaa |
42313123 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 71; Significance: 4e-32; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 5 - 115
Target Start/End: Complemental strand, 47978055 - 47977945
Alignment:
| Q |
5 |
gaaaaatctccctccatcagagatggtagaatcgtgctttgttgccggttctggatatgtgaatatcgtcttatcaaagaagtggatagcacaggtgatt |
104 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||| ||| |||||| ||| ||||| ||||||||||||||||||||| || |||||||| |
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| T |
47978055 |
gaaaaatctccctccatcagagatggtagaatcgtgctctgttgcgggtcctggatttgtcaatattgtcttatcaaagaagtggatatcaaaggtgatt |
47977956 |
T |
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| Q |
105 |
gattgtatttc |
115 |
Q |
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|||| ||||| |
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| T |
47977955 |
cattgaatttc |
47977945 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 236 - 343
Target Start/End: Complemental strand, 47977846 - 47977739
Alignment:
| Q |
236 |
tgcagagcttacagaagatgctcacttgtggtattcattcatgggctcctcgacttcctgtcaagaggattctggttgacttttcctcgcctaatatagc |
335 |
Q |
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|||||||||||||||||||||| || ||||||| |||||||||| ||||||||||| |||||||| || |||||||||||||||| || |||||||| |
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| T |
47977846 |
tgcagagcttacagaagatgcttaccgatggtattgattcatgggcacctcgacttccaatcaagagggttatggttgacttttcctcaccgaatatagc |
47977747 |
T |
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| Q |
336 |
aaaagaaa |
343 |
Q |
| |
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||||||| |
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| T |
47977746 |
caaagaaa |
47977739 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 56; Significance: 4e-23; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 236 - 343
Target Start/End: Original strand, 51565006 - 51565113
Alignment:
| Q |
236 |
tgcagagcttacagaagatgctcacttgtggtattcattcatgggctcctcgacttcctgtcaagaggattctggttgacttttcctcgcctaatatagc |
335 |
Q |
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||||||||||||||| |||||| || ||||||| |||||||||| ||||||||||| |||||||| || |||||||||||||||| || |||||||| |
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| T |
51565006 |
tgcagagcttacagaggatgcttaccgatggtattgattcatgggcacctcgacttccaatcaagagggttatggttgacttttcctcacccaatatagc |
51565105 |
T |
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| Q |
336 |
aaaagaaa |
343 |
Q |
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|||||||| |
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| T |
51565106 |
aaaagaaa |
51565113 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 8 - 100
Target Start/End: Original strand, 51564827 - 51564919
Alignment:
| Q |
8 |
aaatctccctccatcagagatggtagaatcgtgctttgttgccggttctggatatgtgaatatcgtcttatcaaagaagtggatagcacaggt |
100 |
Q |
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|||||||||||||||| | ||||| |||| |||| |||||| ||| |||||| ||| ||||| |||||||||||||| |||||||||||||| |
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| T |
51564827 |
aaatctccctccatcacaaatggtccaatcttgctctgttgcgggtcctggatttgtcaatattgtcttatcaaagaactggatagcacaggt |
51564919 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 17 - 93
Target Start/End: Original strand, 39711805 - 39711881
Alignment:
| Q |
17 |
tccatcagagatggtagaatcgtgctttgttgccggttctggatatgtgaatatcgtcttatcaaagaagtggatag |
93 |
Q |
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||||||||| |||||||| ||||||| |||||||||| ||||| ||||||||| ||||||||||| |||||||||| |
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| T |
39711805 |
tccatcagatatggtagagtcgtgctctgttgccggtcttggatttgtgaatattgtcttatcaaataagtggatag |
39711881 |
T |
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