View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1836_low_62 (Length: 340)
Name: NF1836_low_62
Description: NF1836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1836_low_62 |
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| [»] chr7 (5 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 260; Significance: 1e-145; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 42 - 340
Target Start/End: Complemental strand, 26805737 - 26805442
Alignment:
| Q |
42 |
gggtaaggaaatttagtattgctatcacttttgaagtggtaaactttaacacnnnnnnnnnntgcacgattcactatttgtacgtaaatgaaagaaaata |
141 |
Q |
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| T |
26805737 |
gggtaaggaaatttagtattgctatcacttttgaagtggtaaactttaacacaaaaaaa---tgcacgattcactatttgtacgtaaatgaaagaaaata |
26805641 |
T |
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| Q |
142 |
agaaataagagagattaacgttgaaggtaccttgcgacgtagggtggtgatagggttatctgcggcatcaaccaagacacggcggtcacggaaggttaaa |
241 |
Q |
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| T |
26805640 |
agaaataagagagattaacgttgaaggtaccttgcgacgtagggtggtgatagggttatctgcggcatcaaccaagacacggcggtcacggaaggttaaa |
26805541 |
T |
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| Q |
242 |
agagaacctttaactttgaagacaatattgccgttgacatcggtgacgacgaagtttccgtctgaaattgctatcacctttttgaccacagccaaatcc |
340 |
Q |
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| T |
26805540 |
agagaaactttaactttgaagacaatattgccgttgacatcggtgacgacgaagtttccgtctgaaattgctatcacctttttgaccacagccaaatcc |
26805442 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 148 - 330
Target Start/End: Complemental strand, 26795741 - 26795559
Alignment:
| Q |
148 |
aagagagattaacgttgaaggtaccttgcgacgtagggtggtgatagggttatctgcggcatcaaccaagacacggcggtcacggaaggttaaaagagaa |
247 |
Q |
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| T |
26795741 |
aagagagaataaagtggaacctaccttacgacggagggtggtgatggggttaccagcagcatcaagcaagacacggcgatcacggagggttaagagagag |
26795642 |
T |
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| Q |
248 |
cctttaactttgaagacaatattgccgttgacatcggtgacgacgaagtttccgtctgaaattgctatcacctttttgaccac |
330 |
Q |
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| T |
26795641 |
cctttaactttgaagacaatattgccgttgacatcagtaacagcgaagtttccgtctgaaatggtcatcacctttttcaccac |
26795559 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 147 - 340
Target Start/End: Complemental strand, 26800533 - 26800340
Alignment:
| Q |
147 |
taagagagattaacgttgaaggtaccttgcgacgtagggtggtgatagggttatctgcggcatcaaccaagacacggcggtcacggaaggttaaaagaga |
246 |
Q |
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||||||||| ||| |||||| |||||||||||| | ||| | ||| |||| | | ||||||||||||||||||||||||||||||| |||||| ||||| |
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| T |
26800533 |
taagagagagtaaaattgaagataccttgcgacgcaaggttgcgatggggtaaccagcggcatcaaccaagacacggcggtcacggagggttaagagaga |
26800434 |
T |
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| Q |
247 |
acctttaactttgaagacaatattgccgttgacatcggtgacgacgaagtttccgtctgaaattgctatcacctttttgaccacagccaaatcc |
340 |
Q |
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| T |
26800433 |
accttttactttgaacacgatgttgccgttgacatcagtgacggcaaagtttccatctgaaatggtcataacctttttcacgacagccaaatcc |
26800340 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 169 - 258
Target Start/End: Complemental strand, 26789810 - 26789721
Alignment:
| Q |
169 |
taccttgcgacgtagggtggtgatagggttatctgcggcatcaaccaagacacggcggtcacggaaggttaaaagagaacctttaacttt |
258 |
Q |
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| T |
26789810 |
taccttgcgacgtagggtggtgatggggttaccggaggcatcaaccaagacacggcggtcacggagggttaagagagaacctttgacttt |
26789721 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 148 - 282
Target Start/End: Complemental strand, 26836331 - 26836197
Alignment:
| Q |
148 |
aagagagattaacgttgaaggtaccttgcgacgtagggtggtgatagggttatctgcggcatcaaccaagacacggcggtcacggaaggttaaaagagaa |
247 |
Q |
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|||||||| ||| |||||| ||||||||||||||||||| |||| |||||| | || |||||||||||||||||| ||||||| | ||| || | |||| |
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| T |
26836331 |
aagagagaataaagttgaacataccttgcgacgtagggtgatgatggggttaccggccgcatcaaccaagacacggtggtcacgtatggtaaacacagaa |
26836232 |
T |
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| Q |
248 |
cctttaactttgaagacaatattgccgttgacatc |
282 |
Q |
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| T |
26836231 |
cccttaactttgaaaactatgttgccgttgacatc |
26836197 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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