View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1836_low_64 (Length: 337)
Name: NF1836_low_64
Description: NF1836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1836_low_64 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 193; Significance: 1e-105; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 17 - 276
Target Start/End: Complemental strand, 10919037 - 10918780
Alignment:
| Q |
17 |
tcaaaccattttatcttcatctgatacgtttttcatcaacaccaaaacaaactttcaacacctacttacctagatcagtactggtttggctgaaaatgtt |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| ||||||||||||||||| | |
|
|
| T |
10919037 |
tcaaaccattttatcttcatctgatacgtttttcatcaacaccaaaacaaactttcaacacctacttgtctagatcggtattggtttggctgaaaatggt |
10918938 |
T |
|
| Q |
117 |
agatttggaatacatattggtctcaggaccgtaatattttctttccttttgttttcatctctaaatcgtgcattctaaaaagatcaatcatctttgtcga |
216 |
Q |
| |
|
|| | ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||| |||||| |||||||||| |
|
|
| T |
10918937 |
agct--ggaatacatattggtctcaggaccgtaatattttctttccttttgttttcatccctaaatcgtgcattctaagaaggtcaatcgtctttgtcga |
10918840 |
T |
|
| Q |
217 |
tggatttttccagaaacatcatggttgcagtgagtaaaatacatggatttaaaaaatatc |
276 |
Q |
| |
|
||| ||||||||||||||| |||| ||| ||||||||||||||||||||||||||||||| |
|
|
| T |
10918839 |
tgggtttttccagaaacattatggctgccgtgagtaaaatacatggatttaaaaaatatc |
10918780 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 178; E-Value: 6e-96
Query Start/End: Original strand, 14 - 250
Target Start/End: Complemental strand, 43958787 - 43958553
Alignment:
| Q |
14 |
tcatcaaaccattttatcttcatctgatacgtttttcatcaacaccaaaacaaactttcaacacctacttacctagatcagtactggtttggctgaaaat |
113 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| |
|
|
| T |
43958787 |
tcatcaaaccattttatcttcatctgataggtttttcatcaacaccaaaacaaactttcaacacctacttgcctagatcggtactggtttggctgaaaat |
43958688 |
T |
|
| Q |
114 |
gttagatttggaatacatattggtctcaggaccgtaatattttctttccttttgttttcatctctaaatcgtgcattctaaaaagatcaatcatctttgt |
213 |
Q |
| |
|
| ||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||| ||| |||||| ||||||| |
|
|
| T |
43958687 |
ggtagct--ggaatacatattggtctcaggaccgtaatattttctttccttttgttttcatccctaaatcgtgaattctaagaaggtcaatcgtctttgt |
43958590 |
T |
|
| Q |
214 |
cgatggatttttccagaaacatcatggttgcagtgag |
250 |
Q |
| |
|
|||||| |||||||||||||||||||| ||||||||| |
|
|
| T |
43958589 |
cgatgggtttttccagaaacatcatggctgcagtgag |
43958553 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University