View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1836_low_65 (Length: 332)
Name: NF1836_low_65
Description: NF1836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1836_low_65 |
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Alignment Details
Target: chr7 (Bit Score: 88; Significance: 3e-42; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 201 - 323
Target Start/End: Complemental strand, 41205627 - 41205509
Alignment:
| Q |
201 |
gtagagattataacaaaattttagatatttatagagattatttacttaattaatctttttaaagtaactataaaataataaattc-tattagatttctac |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||| || |||||||||||||| |
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| T |
41205627 |
gtagagattataacaaaattttagatatttatagagatta-----ttaattaatctttttaaagtaactacaaaataataaactcttattagatttctac |
41205533 |
T |
|
| Q |
300 |
atgtagactatgaatgtccccttt |
323 |
Q |
| |
|
|||||||||||||||||||||||| |
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|
| T |
41205532 |
atgtagactatgaatgtccccttt |
41205509 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 212 - 253
Target Start/End: Original strand, 31521374 - 31521415
Alignment:
| Q |
212 |
aacaaaattttagatatttatagagattatttacttaattaa |
253 |
Q |
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||||||||| | ||||||||||||||||||||||||||||| |
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|
| T |
31521374 |
aacaaaattctctatatttatagagattatttacttaattaa |
31521415 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 215 - 253
Target Start/End: Original strand, 37717666 - 37717704
Alignment:
| Q |
215 |
aaaattttagatatttatagagattatttacttaattaa |
253 |
Q |
| |
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||||||||| ||||||||||||||||||||||||||||| |
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|
| T |
37717666 |
aaaattttaaatatttatagagattatttacttaattaa |
37717704 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 215 - 253
Target Start/End: Complemental strand, 36258802 - 36258764
Alignment:
| Q |
215 |
aaaattttagatatttatagagattatttacttaattaa |
253 |
Q |
| |
|
||||||||| ||||||||| ||||||||||||||||||| |
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|
| T |
36258802 |
aaaattttaaatatttataaagattatttacttaattaa |
36258764 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 225 - 256
Target Start/End: Complemental strand, 39676935 - 39676904
Alignment:
| Q |
225 |
atatttatagagattatttacttaattaatct |
256 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
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|
| T |
39676935 |
atatttatagagattatttacttaattaatct |
39676904 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 212 - 253
Target Start/End: Complemental strand, 13060046 - 13060005
Alignment:
| Q |
212 |
aacaaaattttagatatttatagagattatttacttaattaa |
253 |
Q |
| |
|
||||||||| || |||||||||||||| |||||||||||||| |
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|
| T |
13060046 |
aacaaaattctaaatatttatagagatcatttacttaattaa |
13060005 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 212 - 253
Target Start/End: Complemental strand, 29919578 - 29919537
Alignment:
| Q |
212 |
aacaaaattttagatatttatagagattatttacttaattaa |
253 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||| |||| |
|
|
| T |
29919578 |
aacaaaattttagatatttataaggattatttacttatttaa |
29919537 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 212 - 253
Target Start/End: Original strand, 24368449 - 24368490
Alignment:
| Q |
212 |
aacaaaattttagatatttatagagattatttacttaattaa |
253 |
Q |
| |
|
|||||||||||| ||||||||| |||| |||||||||||||| |
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|
| T |
24368449 |
aacaaaattttaaatatttataaagatcatttacttaattaa |
24368490 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 212 - 253
Target Start/End: Original strand, 3735439 - 3735480
Alignment:
| Q |
212 |
aacaaaattttagatatttatagagattatttacttaattaa |
253 |
Q |
| |
|
||||||||| || |||||||||| |||||||||||||||||| |
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|
| T |
3735439 |
aacaaaattataaatatttatagggattatttacttaattaa |
3735480 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 212 - 253
Target Start/End: Complemental strand, 40305169 - 40305128
Alignment:
| Q |
212 |
aacaaaattttagatatttatagagattatttacttaattaa |
253 |
Q |
| |
|
||||||||| || ||||||||| ||||||||||||||||||| |
|
|
| T |
40305169 |
aacaaaattctaaatatttataaagattatttacttaattaa |
40305128 |
T |
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